Sinocyclocheilus anshuiensis: 107668081
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Entry
107668081 CDS
T04917
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
sanh
Sinocyclocheilus anshuiensis
Pathway
sanh04510
Focal adhesion
sanh04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sanh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107668081
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107668081
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sanh00536
]
107668081
Glycosaminoglycan binding proteins [BR:
sanh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107668081
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
SNARE
Motif
Other DBs
NCBI-GeneID:
107668081
NCBI-ProteinID:
XP_016315338
LinkDB
All DBs
Position
Unknown
AA seq
1491 aa
AA seq
DB search
MFRLVDSRTLLLLVATHCVLLSLVRCQQEDDQEDFGSCIQDGQQYADHAVWKPEACRVCV
CDAGAVLCDEVICEDLRDCANPIIPPGECCPICPADTDEPIGSLGAKGQKGEPGDIADVV
GPRGPAGPMGPPGEQGPRGEKGPKGEKGNPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGPA
GPLGPRGPSGPPGKPGSDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGIKGHRGHPGLD
GAKGEAGAAGAKGESGANGESGAPGPMGPRGLPGERGRSGPPGAAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGEAGTPGSPGPAGASGNPGTDGIP
GAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERGVA
GPQGAPGPSGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLLGAKGAPGDRGVP
GVTGPKGGTGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPSGASGEDGRPGPPGPLGAR
GQPGVMGFPGPKGANGEPGKPGEKGLVGHTGLRGLPGKDGETGAAGPPGPAGLAGERGEQ
GQPGPSGFQGLPGPTGAPGEPGKPGDQGVPGEGGAAGPTGPRGERGFPGERGGAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGAAGAQGPPGLQGMPGERGVVGIPGAKGDRGDSGEKGPE
GAPGKDGARGLTGPIGPPGPSGPNGAKGETGPIGSIGAPGARGAPGDRGEIGAPGPAGFA
GPPGADGQPGIKGEQGESGQKGEAGSLGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGAT
GFPGAAGRVGSPGPNGNPGPAGPAGAAGKDGPKGVRGDAGPPGRAGDAGLRGPSGAPGEK
GEPGEDGPPGPDGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGSSGDR
GPPGPVGPPGLTGPAGETGREGNPGSDGPPGRDGASGVKGERGNTGPVGAPGAPGAPGAS
GPVGPIGKQGDRGENGPQGPAGSPGPAGARGMVGPQGPRGDKGEAGEAGERGQKGHRGFT
GLQGLPGPPGASGDQGAAGSAGPSGAKGPAGPVGPAGKDGSNGQPGPIGPPGPRGRSGEA
GPSGPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKGPDPLRYMRADEASSSLRQHDVEVD
ATLKSINSQIEDIRSPDGSRKNPAHSCRDLKLCHPEWKSGDYWVDPNLGCAADAIKVFCN
METGETCVKPSTPKIPRKNWWSSKSKAQKHVWFGESMNGGFHFSYADSSQTPSTTSIQMN
FLRLLSTEATQTITYHCKNSVAYMDQATGNLKKAVLLQGSNDVEIRAEGNSRFTYGVLED
GCKKHTGQWAKTVIEYKTQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagattagtggattcacggactctcctgctacttgtagcaacgcattgcgttttg
ctatcccttgtaagatgtcaacaagaagatgaccaggaagactttggcagctgcatccaa
gatggccagcagtatgcagaccatgcagtgtggaagccagaagcatgccgtgtctgtgtg
tgcgatgcaggggcagtgctatgtgacgaggtcatctgtgaggacctgagagactgtgcc
aatcccatcattccacctggagagtgctgtcccatctgcccagctgacactgacgaacct
atcgggtcacttggtgcaaagggacagaaaggagaaccaggcgatattgcagatgttgta
ggaccaagaggacctgctggcccaatgggacctccaggagagcagggaccacgtggcgag
aaaggacctaagggtgagaagggaaatcccggcccaagagggagagatggcgagcctggt
acacctggaaacccaggaccccccggaccaccaggacctaatggtccccctggacttgga
ggaaactttgctgctcagatggctggtggttttgatgagaaggcaggaggtgctcagatg
ggtgtgatgcagggaccaatgggtccaatgggtccccgtggtcctcccggcccttctgga
gcacctggcccacaaggtttccagggcaaccctggagaggctggtgaacccggccctgct
ggtcctcttggaccccgtggcccttctggaccccctggaaaacccggaagtgatggtgag
gctggcaaacctggtaagtctggcgagcgtggacccccagggcctcagggagcccgtgga
ttccccggaacccctggccttcctggcatcaagggacacagaggacacccaggtcttgat
ggagctaaaggagaggccggtgctgcaggtgctaagggtgaatctggtgctaatggtgag
agcggtgctcctggaccaatgggtccacgtggtctgcccggtgagagaggtcgttctgga
cctcctggtgctgctggtgcccgtggtaatgatggtctgcctggtcctgctggtcctcct
ggccctgttggtcctgctggtgctccaggtttcccaggatcccctggtgctaagggtgaa
gctggtcccactggagctcgtggacctgagggcgcacaaggaccccgtggagaggccggt
acacctggatcacctggacccgccggtgcatctggtaaccctggtactgatggtattcct
ggtgccaaaggatctgctggtgcttctggcattgctggtgcccctggtttcccaggaccc
cgtggcccaccaggacctcagggagctactggacctcttgggcctaaaggacaatctgga
gaccctggtatcccaggatttaaaggcgaggctggacccaagggagagcgtggtgttgca
ggacctcagggtgcccctgggccatctggagaggaaggcaagagaggaccaagaggagag
cctggttctgccggacctctcggacctcctggagaaagaggagctccaggtaaccgtgga
ttccctggtcaggatggtctattaggagcaaagggcgcacctggtgatcgtggtgttcct
ggtgtgaccggcccgaaaggaggaactggagatcctggtcgcacaggcgagcctggtctt
cctggagccagaggtctcactgggcgccctggtgatgctggacctcaaggaaaagttgga
ccatctggtgcctctggtgaagatggacgccctggtcctcctgggcctctgggagctcgt
ggtcagcctggagtgatgggattccctggacctaagggagccaatggtgaacctggaaaa
cctggagagaaaggacttgttggacacactggtcttagaggtttgcctggtaaagatgga
gagactggagctgctggtccacctggccctgctggtctagctggtgagagaggagagcag
ggtcagcctggtccatctggcttccagggtcttccaggacctactggagctcccggagag
cctggtaaacctggtgaccagggtgttcctggagagggtggtgctgctggtcccactgga
ccaagaggtgaacgtggtttccctggtgagagaggaggagccggccctcagggtctccag
ggaccaagaggacttccaggaactcccggtactgatggacctaagggtgcaattggacca
gctggtgctgctggagctcagggccctcctggtctgcagggcatgcctggtgagagagga
gttgttggaatccctggagctaaaggtgacagaggtgacagcggagagaaaggacctgaa
ggtgctcctggcaaagatggtgcaagaggtttaactggtccaattggtccacctggtcct
tctggtcccaatggcgctaagggtgaaactggtcccattggctcaattggtgctcctggt
gctcgtggtgcccctggcgatcgtggtgagattggtgcacccggacctgctggctttgct
ggaccacctggtgctgatggccagcctggaattaagggagagcagggtgagtcaggacag
aaaggtgaggctggatcccttggaccccaagggccatcaggagcacccggcccagtgggc
ccaactggtgttacgggacctaagggagcacgtggagcccaaggagcccctggtgccact
ggtttcccaggtgctgccggaagagttggatcacctggccccaatggtaaccctggtcct
gctggccctgcaggtgctgctggtaaagatggtcctaagggagttcgtggtgatgccggt
cccccaggcagagcaggagatgctggactgcgtggaccttctggtgctcctggagagaag
ggagagcctggagaggatggtcctcctggtcctgatggtccttccggccctgctggtctt
gctggtcagcgtggtattgttggtttgcctggtcagcgtggtgaaagaggtttcccagga
cttccaggaccctctggtgagcctggcaaacagggagcttctggctcttctggtgaccgt
ggaccccctggccctgttggacctcctggattgactggacctgctggagagactggacgt
gagggtaatcctggatctgatggtccacctggtagagatggtgcttctggtgtgaagggt
gagcgtggtaacactggcccagtcggtgctcctggagctcctggtgcacctggtgcttct
ggtcccgttggtccaattggcaaacagggagacagaggagagaatggcccacaaggacct
gctggatcacctggacccgctggagctagaggcatggttggaccccaaggacctcgtggt
gataagggtgaggcaggagaagctggagaaagaggtcagaagggacacagaggattcacc
ggtctgcagggtctgcctggacctcctggtgcttctggagaccagggtgctgctggatct
gctggaccgagtggcgctaaaggacctgcaggacctgttggaccagctggtaaggatggt
tctaatggtcagcctggacctattggaccacctggacctcgtggacgctctggagaggct
ggcccaagtggtccacctggtaaccctggaccccctggccctcctggtccccctggccct
ggcattgacatgtctgccttcgctgggttgtctcagcccgagaagggacccgatcctctg
cgttacatgcgtgccgacgaggcctccagctctcttagacaacatgatgtggaggtggac
gccacactgaaatcaatcaacagccagatcgaggacatccgcagcccagatggctctcgc
aagaaccctgcgcactcctgccgagacctgaaactctgccaccctgaatggaagagcggt
gactattgggtggatcctaaccttggttgcgctgctgatgccatcaaagttttctgcaac
atggagaccggagagacctgtgtgaagcccagcactcccaaaatcccacgcaagaactgg
tggagcagcaagagcaaggcgcagaagcacgtgtggtttggagagagtatgaacggtgga
ttccacttcagctatgctgatagcagccagactcctagtactaccagcatccagatgaac
ttcctgagactgctgtctactgaggccactcagaccatcacctaccactgcaagaacagc
gttgcttacatggaccaagccacaggcaacctgaagaaggccgttctgctgcagggctcc
aatgatgtggagatcagagcagagggcaacagccgctttacatatggagtacttgaggat
ggctgcaagaagcacacaggtcagtgggccaagactgtgattgagtacaaaactcagaag
acatccaggctgcccatcgtggatattgctcccatggacatcggaggagcagatcaggag
tttggagtggacattggtgcagtctgcttcttgtaa
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integrated database retrieval system
