Sinocyclocheilus anshuiensis: 107670481
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Entry
107670481 CDS
T04917
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sanh
Sinocyclocheilus anshuiensis
Pathway
sanh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sanh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107670481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sanh03019
]
107670481
03041 Spliceosome [BR:
sanh03041
]
107670481
Messenger RNA biogenesis [BR:
sanh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107670481
Spliceosome [BR:
sanh03041
]
Complex B
Other components
Prp19-related factors
107670481
Complex C
107670481
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_19
TPR_15
TPR_16
ARM_TT21_C
NRDE-2
ARM_TT21
TPR_1
ATG1-like_MIT2
Tcf25
Motif
Other DBs
NCBI-GeneID:
107670481
NCBI-ProteinID:
XP_016318579
UniProt:
A0A671SY02
LinkDB
All DBs
Position
Unknown
AA seq
842 aa
AA seq
DB search
MPTLSGKSYVLFEDDDLPYEEEIIRNPYSVKCWIRYIEHKQNAQKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDLAYEEVNNCHERALVFMHKMPRLWIDYCQFMVSQCK
ITRSRRTFDRALRALPITQHPRIWPLYLRFAHNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAIRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLKVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGQDEDGDIDLELRLARFELLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGQPRQIINTYTEAVQTIDPLKATGKPHSLWVSFARFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEDSFKAYERGI
ALFRWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKYAKTIYLLYAKLEEE
YGLARHAMAVYERATAAVEPEEQHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTAHFWQTWKEFEVRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATGTVTDLAPGQSGVDDMKLLEQKAQQLAAEAEQDKPK
DKILFVRSDTSRSELAELAKQANPDEIDIDDEDEDAEDGEPDEVQLEQKSVPTAVFGGLK
DD
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgccaacgcttagcggaaagtcatacgttttattcgaagatgatgatttgccttatgaa
gaagaaattatcaggaatccgtattcagtcaaatgctggatacgttacattgagcacaag
caaaatgctcagaaatcagtgctcaatatgatctatgaaagagcattaaaagagctgcct
ggcagttacaagttgtggtacaactacctgagagagagaaggaaacaggtgaaaggcaag
tgtgtcacagacctagcatacgaggaggtgaacaactgtcatgagagagcacttgtgttt
atgcataagatgccgaggctatggatcgactactgtcagttcatggtgtctcaatgcaaa
attactcggagcagacggacgttcgatagggcgttaagagcactacccattacccagcat
cctcgcatctggcccctgtatcttcgctttgcccataacttgcctctcccagaaacggct
attcgtgtttaccgccggtacttaaagttgtctcctgagaatgcagaggaatacattgat
tacctgcgttcagttggacgtctggatgaagctgcgatccggctggcagctgtggtcaat
gatgaaaactttgtttctaaagagggaaagtccaattatcagctctggcacgagctctgt
gacctcatctcacaaaacccggacaaggtgacctcactgaaagtgggagcgattatccga
ggaggcctcactcgctttactgaccagcttggcaaactctggtgttctctggctgattac
tacatccgcagtggacactttgagaaggctcgagatgtatatgaggaagccatcctaacc
gtagtcactgtgcgagacttcacccaggtttttgacagttatgcacagtttgaggagagc
atgatcgctgccaagatggagaccacgtctgaactgggacaagatgaagatggtgacatt
gacttggagttgcgattggcccgttttgagttgctgataactcgacggccacttttactg
aacagtgtgctgctgcgtcagaaccctcacaacgttcacgagtggcacaagagagtcaaa
ctctatgagggccaacctcgacagattatcaacacatacacagaagctgtgcaaacgata
gatcctttgaaagccacaggaaaacctcactctctctgggtatctttcgccagattctat
gaggataatgaacagctggatgatgctcggactatctttgagaaggccacaaaggtgaac
tacaaacaggtggatgatcttgctgcagtgtggtgtgaatatggagagatggagctgaga
catgagaattatgaccaagctttgcgtatactaaggaaagcaacagcaattccagcaaga
aaagcagagtattttgattcatcagaaccagtgcagaatcgagtttacaagtctctgaaa
gtgtggtccatgcttgcagacttggaagagagtcttggcacattccagtccacaaaggca
gtgtatgatcgcatcattgatctccggattgccactcctcagatcatcattaactatgcc
atgtttcttgaagaacacaactactttgaggatagtttcaaggcatacgagcgtggcatt
gccctctttaggtggcctaatgtccatgacatctggaacacgtacctcaccaagttcatt
gaccgttatggaggcaagaagctggagagagcacgcgatctgtttgagcaagcgctggat
gggtgtcctgctaaatatgccaaaacaatctacttgctgtatgctaagctggaagaggag
tacggtctggcgcgacatgccatggctgtgtatgagagagccactgcagctgtggaacca
gaggaacaacatcagatgttcaacatctacatcaaacgggcagcagagatttatggagtc
actcacacaagagccatctatcagaaagccattgaggtcctgccagatgagcacgccaga
gacatgtgcctgcgctttgcggacatggagagcaaacttggggagattgacagagcgaga
gccatctattcctactgctcacagatctgtgatccaagggtgaccgctcatttctggcaa
acatggaaggagtttgaggtacgccatggtaatgaggacaccatccgcgagatgctgcgt
attaaacgcagtgtgcaggccacatacaacacacaagtcaacttcatgtcctctcagatg
ctcaaggctactggaacagtgacagatcttgctcctgggcagagcggagtggatgacatg
aagctgctggagcagaaggctcaacagctcgctgcagaggctgagcaggacaaacctaaa
gacaagatcctcttcgtcaggagtgacacctctcgcagtgaacttgccgaactggccaaa
caagctaatccagatgagattgacattgatgatgaagatgaggatgcagaggatggggaa
ccagatgaggtgcagttggagcagaagtctgtccctactgctgtcttcggaggactaaag
gatgactga
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