Sinocyclocheilus anshuiensis: 107672506
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Entry
107672506 CDS
T04917
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sanh
Sinocyclocheilus anshuiensis
Pathway
sanh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sanh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107672506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sanh03019
]
107672506
03041 Spliceosome [BR:
sanh03041
]
107672506
Messenger RNA biogenesis [BR:
sanh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107672506
Spliceosome [BR:
sanh03041
]
Complex B
Other components
Prp19-related factors
107672506
Complex C
107672506
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_15
NRDE-2
TPR_16
ARM_TT21_C
ARM_TT21
TPR_1
ATG1-like_MIT2
DUF4515
Motif
Other DBs
NCBI-GeneID:
107672506
NCBI-ProteinID:
XP_016321207
LinkDB
All DBs
Position
Unknown
AA seq
849 aa
AA seq
DB search
MPTLSGKADVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQNAQKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERALVFMHKMPRIWIDYCQLMVSQCK
ITRSRRTFDRALRALPITQHPRIWPLYLRFARNLPLPETAIRVFRRYLKLSPENAEEYID
YLRSVGRLDEAAIRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLKVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSFAQFEES
MIAAKMETTSELGQDEEDDIDLELRLARFESLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGQPRQIINTYTEAVQTIDPMKATGKPHTLWVSFARFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEDSFKAYERGI
ALFKWPNVHDIWNTYLTKFIDRYGGKKLERVRDLFEQALDGCPAKYAKTIYLLYAKLEEE
YGLARHAMAVYERATAAVEPEERHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTARFWQTWKEFEVRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTNATGTVSDLAPGQSGVDDMKLLEQKAQQLAAEAEQ
DKPKPKDKILFVRSDTSRSELAELAKQANPDEIDIDDDEDEDAEDGEPDEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccaacgcttagcggaaaggcagacgttttattcgaagatgatgatttgccttatgaa
gaagaaatcatcaggaatccgtattcagtcaagtgctggatgcgttacattgagcacaag
caaaatgctcagaaatcagtgctcaatatgatctatgaaagagctttaaaagagctgcct
ggcagttacaagttgtggtacaactacctgagagagagaaggaaacaggtgaaaggcaaa
tgtgtcacagatccagcatatgaggaggtgaacaactgtcatgagagagcacttgtgttt
atgcataagatgcccaggatatggatcgactactgtcagctcatggtgtctcaatgcaaa
attacacggagcagacggacattcgatagggcgttaagagcgctacccattacccagcat
cctcgcatctggccactgtatcttcgctttgcccgtaacttgcctctcccagaaacagct
attcgtgttttccgccggtacttaaagttgtcacctgagaatgcagaggaatacattgat
tacctgcgttcagttggacgtctggatgaagctgcgattcggctggcagctgtggtcaat
gatgaaaactttgtttcgaaagagggaaagtccaattatcagctctggcacgagctctgt
gacctcatctcacaaaacccagacaaggtgacttcactgaaggtgggagcgattatcaga
ggaggtctcactcgctttactgaccagcttggcaagctctggtgttctctggctgattac
tacatccgcagtggacactttgagaaggctcgagatgtatacgaggaggccatcctaaca
gtagtcactgtgcgagacttcacccaggttttcgacagctttgcgcagtttgaggagagt
atgattgctgccaagatggagaccacgtctgaactgggacaagatgaagaagatgacatt
gacttggagttgcgattggcccgttttgagtcgctgataactagacgaccgcttctatta
aacagcgtgctgctgcgtcagaaccctcacaatgttcacgagtggcacaagagagtcaaa
ctctacgagggccaaccacgacagatcatcaacacatacacagaagctgtgcaaacgata
gatcctatgaaagccacaggaaaacctcacactctctgggtgtccttcgccagattctat
gaggataatgaacagctggatgatgctaggactatctttgagaaggccacaaaggtgaac
tacaaacaggtggatgatcttgcagcggtgtggtgtgaatatggagagatggagctgaga
catgagaactatgaccaagctttgcgtatactaaggaaagcaacagcgattccagcaaga
aaagcagagtattttgattcttcagaaccagtgcagaatcgagtatacaagtccctgaaa
gtgtggtccatgcttgcagacttggaagagagtcttggcacattccagtccacaaaggca
gtgtatgatcgcatcattgatctccggatcgccactcctcagatcatcattaactatgcc
atgtttcttgaagaacacaactactttgaggatagtttcaaggcatacgagcgtggcatt
gccctttttaagtggcctaatgtccatgacatctggaacacgtacctcaccaagttcatt
gaccgttatggaggcaaaaagctggagagagtgcgagatctgtttgagcaagcgctggat
gggtgtcctgctaaatatgccaaaactatctacttgctgtatgctaagctggaagaggag
tacggtctggcgcgacatgccatggctgtgtatgagagagccactgcagctgtagaacca
gaggaacgacatcaaatgttcaacatctacatcaagcgtgcagcagagatttatggagtc
actcacacaagagccatctatcagaaagccattgaggtcctgccagatgagcacgccaga
gacatgtgtctgcgcttcgctgacatggagagcaaacttggggagattgacagagcgaga
gccatctactcgtactgctctcagatctgtgatccgagggtgaccgctcgtttttggcaa
acctggaaggagtttgaggtacgccacggtaatgaggatacaatccgtgagatgctgcgg
attaaacgcagtgtgcaggccacatacaacacacaagtcaacttcatgtcctctcagatg
ctcaaggcaaccaccaatgctactggaacagtgtcagatcttgctcctgggcagagcgga
gtggatgacatgaagctgctagagcagaaggctcaacagctcgctgcagaggcagaacag
gacaaacccaaacctaaagacaagatccttttcgtcaggagtgacacctctcgcagtgaa
ctcgctgaactggctaaacaagctaatccagatgagattgacattgatgatgatgaagat
gaggatgcagaggatggggaaccagatgaggtgcagttggagcagaagtctgtccctact
gctgtctttggaggactaaaggatgactga
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integrated database retrieval system
