Sinocyclocheilus anshuiensis: 107677351
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Entry
107677351 CDS
T04917
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
sanh
Sinocyclocheilus anshuiensis
Pathway
sanh03020
RNA polymerase
sanh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sanh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107677351
09124 Replication and repair
03420 Nucleotide excision repair
107677351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sanh03021
]
107677351
03400 DNA repair and recombination proteins [BR:
sanh03400
]
107677351
Enzymes [BR:
sanh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107677351
Transcription machinery [BR:
sanh03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
107677351
DNA repair and recombination proteins [BR:
sanh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
107677351
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
107677351
NCBI-ProteinID:
XP_016327717
LinkDB
All DBs
Position
Unknown
AA seq
1141 aa
AA seq
DB search
MYDQDEDIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGNLFLT
LNRKHGVTEAFCIRCIIIAVFFFSKGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTL
PENDDELDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGD
KFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANK
GEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKH
MVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEASDP
YQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMT
S
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatcaagacgaagatatccagtatgatgaagatgatgatgaaatcacccctgat
ttgtggcaggaggcctgttggattgttatcagctcatactttgatgaaaaaggtttggtg
cgacagcagctggactcattcgatgagtttatccagatgtctgtgcagagaattgtggag
gatgctccacccattgacctgcaggctgaggcccagcacacatctggagaggtggaggaa
ccgcctcggtacctcctaaagtttgagcaaatctatctgtccaaacccactcactgggaa
agagatggcgctccatcacctatgatgccaaacgaagctagactccgaaatctcacgtat
tctgcccctctgtatgtggatatcacaaagaccatcataaaagatggggaagagcaacag
cagacacagcatcagaaaaccttcatcggcaaaattcccatcatgctccgttccacgtac
tgtctcctcagcggcctaacagatcgtgatctttgtgagttgaatgagtgcccactggac
cctggaggctacttcatcattaatggttcagagaaggtcctgattgctcaagagaagatg
gccactaacacagtgtatgtgtttgccaagaaagactccaagtatgcttacacaggagag
tgcaggtcatgtctggagaactcctccagacccaccagcaccatctgggtcagcatgatg
gcccgtggaggacagggagtaaagaaaagtgccatcggccagaggattgtttccactttg
ccgtatatccggcaggaagtacccatcatcatagtattccgtgctttgggatttgtgtct
gatagagacatcttggaacacatcatctatgattttgatgatcctgagatgatggaaatg
gtgaagccatcgttagatgaggcctttgtgattcaggaacagaatgtggctttgaacttc
attggctctagaggggccaaacctggtgtcaccaaagagagaagaatcaaatatgctaaa
gaggttttgcagaaggaggtgctgccacatgttggtgtatcagatttctgcgagaccaag
aaagcatattttctaggttacatggttcacagactattgttggccgctctgggcagacga
gagctggatgacagagatcactatggcaacaagaggcttgatctcgctggacccctgctt
gcattccttttcagaggaatgttcaagaatctgctgaaggagatcaggatctacgcacag
aagtttattgacagggggaaagactttaatctggagctggccattaagacacgcatcatt
tctgacggactcaagtactctctggccacgggaaactggggggatgtaaagaaagctcat
caggcaagagctggagtatcgcaggtgttgaacaggttgaccttcgcttccactctttcc
cacctgcgccgtgtaaactcgcctataggacgagatggcaagctggccaaacctaggcag
cttcataacacactgtggggtatggtgtgccctgctgagaccccagagggccatgctgta
ggtttggtgaagaatttagcgctcatggcctacatttctgtgggatctcagccgtccccc
atcctggagttcttggaagagtggagcatggagaacctggaggaaatctcacctgctgcc
attgcagatgcaactaagatttttgtgaatggttgctgggtgggtattcataaagatcca
gagcaactgatgaacacactgcggaaactgaggagacagatggacatcattgtgtctgag
gtgtcaatgatcagagatattcgtgagagggagatcaggatctacacagatgctggcagg
atctgccgtccgctgcttattgtagaaaagcaaaaacttcttctgaagaggcgacatatt
gaccagctcaaagagagagagtacaacaactacagttggcaggacctggtagccagtggt
gtggttgaatatattgacacactagaggaggagactgtgatgttggccatgaccccagat
gaccttcaggagaagggagtggcttattgctccacctacacacattgtgagatccacccg
tccatgattttgggcgtctgtgcatctatcattcccttccctgatcacaaccagtctccc
agaaacacataccagtctgctatgggtaaacaagccatgggagtttacatcaccaacttc
catgtgcgtatggataccctggcacatgtgctctactacccccagaaacccctagtcacg
actcgttccatggagtacctgcgctttagagagctgccggcaggtaatctatttcttaca
ttgaacagaaaacatggtgttacagaggctttctgcataaggtgcattatcattgctgtt
ttttttttctctaaaggcatgcgacatgccatctatgacaagttagatgacgatggtttg
attgctcctggtgtacgtgtgtctggcgaggacgttatcattggtaaaaccgtaacgctt
cccgagaatgacgatgagctggatagcaccaaccgtcgctacactaagagagactgcagc
acattcctgcgcaccagtgaaaccggtatcgttgaccaagtcatggtcacgctaaaccaa
gagggctacaagttttgcaaaattagggtccgttcagttcgtataccacaaattggagac
aagtttgccagtcgtcatggtcagaagggtacctgtggtatccagtacagacaagaggac
atgccgttcacatgtgaaggaatcactccagatatcatcatcaaccctcacgccatcccc
tccagaatgacagtcggccatttgatcgagtgcctgcaggggaaggtgtccgctaacaaa
ggggagattggtgatgccacgccgttcaatgatgctgtgaacgtacaaaaagtctccaac
ctgctgtcagaatatggttaccatctgagaggcaatgaggttctgtataatggcttcacc
ggccgtaagctcacctctcagatcttcattggacccacatactaccagcgtctgaagcac
atggtggatgataagatccactccagagcccgtggtccggtccagatcctcaacagacag
cccatggagggtagatcacgtgatggtgggctgcgttttggagagatggaacgtgactgt
caaatcgctcacggtgctgctcagttcctaaaagagaggctttttgaggcctctgacccg
taccaggtccacgtctgcaatttatgtggcctcatggctatcgcaaacacgcgcacacac
acctatgagtgcaggggctgccgcaacaagacacagatctctttggtgaggatgccgtat
gcctgtaagctcttattccaggagctgatgtctatgagcattgccccacggatgatgacc
agctaa
DBGET
integrated database retrieval system
