Sinocyclocheilus anshuiensis: 107677835
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Entry
107677835 CDS
T04917
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
sanh
Sinocyclocheilus anshuiensis
Pathway
sanh04510
Focal adhesion
sanh04512
ECM-receptor interaction
sanh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sanh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107677835
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107677835
09142 Cell motility
04820 Cytoskeleton in muscle cells
107677835
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sanh04147
]
107677835
00536 Glycosaminoglycan binding proteins [BR:
sanh00536
]
107677835
Exosome [BR:
sanh04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107677835
Glycosaminoglycan binding proteins [BR:
sanh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107677835
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107677835
NCBI-ProteinID:
XP_016328360
LinkDB
All DBs
Position
Unknown
AA seq
1680 aa
AA seq
DB search
MNLKSLGAVLLVFFTISTEVRKSESAACHGCGTGAKCDCSGVKGQKGERGFPGLTGQSGV
PGFPGPEGPIGSRGEKGDDGSTGPSGPKGIRGPPGLPGFPGTPGIPGLPGQDGPPGPRGV
PGCNGTKGERGFPGSPGFPGLEGPLGPPGSIGQKGEPGDVIEINRPSENGSPGFDGLPGS
RGEPGPPGLPGPVGPSGPRGYEGRPGPPGPPGPKGNMGLNFQGPKGEKGDRGLQGPPGPP
GQVGEVSGLPDTVIQQGEKGDRGSPGDPGFPGPPGPPGPQGGQKGEKGEHGELGKRGKPG
KDGEQGLPGYPGDKGEPGPPGLSGRDGTRGEKGDRGPPGPPSYRDGPFPSGIGPKGDSGE
QGFPGPKGDRGLPGIQGPPGPQGLAGIGGPGPSGPPGLPGERGEKGDEGQSGIPFTGPPG
RTGPPGPQGVPGPPGPPGIFNEIQCNRGPPGPAGLQGEQGFQGETGQNGQKGETCVNCFT
NGNPVPGPPGFPGPPGNPGVPGSPGSKGDRGFPGGPGLMGPPGLPGPQGTLGFPGEKGDP
GDTISVLGVKGEKGDTGFPGPLGLPGLEGRPGRDGVPGPPGLRGPPGSALVKGAQGPPGA
PGLPGSSGDRGLPGPPGFGPQGPPGEKGIQGVSGRQGGPGAPGQKGEPGLAVSDKGERGP
PGRDGDPGLPGSPGNPGPSGQPGFPGLPGSKGDPGLPGIGLPGPPGSKGFPGIAGSPGGP
GIPGRSGLDGLPGQPGLPGPKGEPGFGLPGPPGPTGFPGSKGVFGTKGDPGFSGSPGGPG
RPGLDGAPGPKGDPGFPGGAGPRGPPGLPAFGLQGPPGPLGAPGSPGSPGVPGVNGEKGD
RGPPGLSIPGLQGDRGNPGFPGPPGPAGPPGGPGRPGQDGLSGLPGPKGDIGGMGAPGPA
GAPGNPGRQGFSGLKGDDGFPGRPGNPGFPGTKGDRGDTGIPGPPGIGSSTNLLKGQKGE
PGAPGFSGPPGAKGIPGILGDLGFPGQDGRPGLPGPPGPKGDPGLSGTSGSPGAPGLKGS
MGEMGLPGIPGVKGNPGQPGRPGQPGSPGTQGFLGPKGDPGSPGFGLPGTPGPKGEPGPP
GFPGTPGLKGQSGLPGSSGLTGTPGPKGDPGLPGFQGAPGIPGPKGFDGTPGPAGPSGAP
GRPGDPGRTGLPGLPGDKGLAGRDGIPGPPGQKGEPGAPGLGGPGPPGFPGSPGPKGDPG
FPGPPGNSGFPGPKGEVGFPGLPGPAGPVGPPGPPGLPLQGPKGIQGPPGPSGRAGPAGP
PGPEGRRGPPGSGGVKGEKGMPGFPGTPGATGLKGEYGPAGFPGAPGNPGPSGPKGDPGT
QGVPGFPGSKGQPGLPGANGIPGERGDTGTAGPPGDPGYAPEPILLKGERGPPGPPGIPG
SRGPSGPLGLQGLPGSPGNPGDSGPMGPPGFTGSPGRKGNAGPAGQPGPRGYPGPPGPEG
IQGPPGITGSLSAAHGFLITRHSQTTDVPTCPGDTKLIYDGYSLLYVQGNERAHGQDLGT
AGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPQSMPMNMAPITGERIKPFISRCS
VCETPAMVIAIHSQTIQVPSCPDYWDILWIGYSFMMHTSAGAEGSGQALASPGSCLEEFR
SSPFIECHGRGTCNYYSNSYSFWLATVDVNEMFRKPQSETLKAGNLETRVSRCIVCMKRT
NT seq
5043 nt
NT seq
+upstream
nt +downstream
nt
atgaacttaaagagtctcggcgctgtgttactggtgttcttcactataagtactgaggtg
cgcaaatcggagtctgcggcatgtcatggttgtgggactggagcaaagtgtgactgtagt
ggggtgaaaggacagaagggtgagcgagggtttccaggtttaacgggccagtcaggtgtt
ccaggtttccctggaccagaggggccgattggatctcgtggggagaagggtgatgatgga
tctacagggccaagcgggcctaaaggaataagaggacctcctggattaccaggtttccca
ggaacaccaggaatcccaggtctcccgggacaggatggccccccaggacccagaggagtt
cctggctgtaacggaaccaaaggtgaaagaggattcccaggaagtccaggttttcctggt
ttagagggtccactaggtccaccaggttctataggacaaaagggggagcctggggatgtc
atagaaattaatcgcccttcagaaaatgggtctcctggctttgatggtttaccaggctcc
aggggtgaacctggacccccgggtcttccaggtcctgttggtccttctggtccccgaggg
tatgaggggcgtccaggccctcctggtccaccagggccaaagggaaacatgggtttgaac
ttccaaggacccaaaggagagaagggtgaccgtggattacaaggacctcctgggccacca
gggcaggttggcgaagtgtcaggcttacctgatacagtcattcaacaaggagaaaagggt
gatcgcggctcacctggagatcctggttttccaggtccccctggcccccccggtccacaa
gggggccagaaaggtgagaaaggagaacatggggagcttggaaagaggggaaaacctggc
aaagatggtgaacaaggcctccctggatatccgggtgataaaggagaaccaggtcctcct
ggtctgtcggggcgagatggtacaagaggtgagaaaggagatcgaggacctcctggacct
ccatcatacagggatgggccgttcccaagtggaataggaccaaaaggagacagtggtgag
caaggatttcctggccctaaaggagatagaggactgccaggtattcaagggccgcctggg
ccacagggtcttgcaggaattggaggtccagggccttccggtccaccaggtttacctgga
gagagaggagaaaaaggtgatgagggacaatctggaatccccttcactggaccacctggg
agaacaggtccaccagggccccaaggagtcccaggacctcctggtccgccaggaatattc
aacgaaatacaatgtaatcgtggtcctcctggtcctgcaggcctgcagggggagcaagga
tttcaaggagaaacaggacagaatggtcaaaaaggagagacatgcgtcaattgtttcact
aatggaaaccctgtcccaggacccccggggtttccaggtcctcctggaaatccaggtgta
cctggttcgcctggatctaaaggagacagaggattcccgggagggccagggctcatgggc
ccacctggattaccaggacctcagggtactcttggattccctggagagaagggcgaccca
ggcgataccatctctgttctgggtgtgaaaggagaaaagggagacacaggctttcctggc
cctctaggtctgccgggactcgaaggaagacctggtcgtgatggagttcctggtccccca
ggcctcagaggaccacctggttcggcattggtgaaaggagcacaaggtccaccaggtgca
cctggcttgccaggatcttcaggagacaggggtctgcctggtcccccaggatttggtcct
cagggacctcctggagagaaaggtatccagggtgtttcaggacgacagggtggccctgga
gcaccaggtcagaaaggtgaacctgggttggcagtgtcagataaaggtgaacgtggaccc
ccaggacgtgatggagatccaggtttgccaggaagtccaggtaatccaggcccatcagga
cagcctgggttcccaggcttacctggatccaaaggagatcctggtcttcctggtattggt
ttgccaggaccccctggttctaaaggatttcctggtattgctggttcccctggtggacct
ggtattcctggacgatcaggtttggatggactgcctggtcagcctggattacctggaccc
aaaggagagcctggttttggtctacctggccctccaggtcctacaggattcccaggcagt
aaaggtgtcttcggtactaaaggtgatcctggtttctctggaagccctggtggaccaggt
cgtccaggtcttgacggtgcccctggacctaaaggtgatcctggttttcctggtggtgct
ggtcctcgtggccccccggggctccctgcctttggtcttcagggcccccctggtcctctg
ggagctcctggttctccggggtctcctggagtccctggtgtgaatggagagaaaggagac
cgtggccccccaggtttgagtattccagggttgcaaggtgacagaggaaatcctggattt
cctggacctcctggtccagctggtccacctgggggtccaggacgacctggtcaagatggc
ctatcaggactgcctgggcctaagggagacattggtgggatgggtgctcccggacctgca
ggtgcccctggcaaccctggcagacaaggcttttcaggactaaaaggagatgacggattc
ccaggacgaccaggaaacccaggtttcccaggaacaaagggagacagaggtgacacaggc
attccaggcccacctggcataggctcatccacaaatcttcttaaaggacaaaaaggagaa
cccggagctccaggttttagcggaccaccaggagcaaagggtattcccggtatccttgga
gatcttggttttcctgggcaagatggaaggccaggtctaccaggacctccaggccccaaa
ggtgatcctggtctctcaggaacttcagggtctccaggagccccaggactgaagggtagc
atgggggagatgggtttaccaggaattcctggagtgaaaggaaaccccggccaacctggc
cgacctggccagcctggatccccaggaacacaagggttcctgggacccaaaggtgatcct
ggttcaccaggatttggattaccaggaactcctgggccaaagggtgaaccaggccctcca
ggatttcctggaacccctggtctgaaaggccagtctggccttccaggatcttcaggcttg
acaggtacccctggaccaaagggtgatccaggactcccagggttccaaggtgcacctggt
attcctggcccaaaaggttttgatggcactccaggccctgctggtcctagtggagcacct
ggtaggccaggagatcctggacgaactggattacctggcctccctggtgataaaggtctt
gctggtcgtgatggtattccaggacctccaggacaaaagggtgaaccaggtgctccaggc
cttggtggcccaggcccacccggtttccccggttcacccgggcctaaaggagaccctggt
tttccgggacctcctggtaattctggatttcctggtccaaagggtgaggtaggattccct
gggttgcctggtccagctggtcctgtaggaccaccggggcctccaggcctgcctctgcag
ggacctaaaggtatccaaggcccacctggtccttccggaagagctggcccggcaggtcct
cctggccctgagggtcgacgtgggcctccaggtagtggaggagtaaaaggtgagaagggc
atgcctggattccctgggacacctggtgcaacaggactgaaaggagaatacggtcccgct
ggctttccaggtgctccaggaaatccaggacctagtggcccgaaaggagatcctggaact
caaggtgttcctggattcccaggatctaaaggacagcctggtcttcctggagctaatggc
atcccaggagaacgtggtgacactggaacagcaggacctcctggtgacccaggttatgct
ccagagcctattcttttgaagggggagcgtggtccacctggaccacctggtatcccaggc
agcagaggcccatcaggccccttgggattacagggtcttccgggttcacctggcaacccc
ggagactcaggtccaatgggacctccaggatttaccggctcaccaggaaggaagggaaat
gcaggaccagctggacaaccaggtccgcgtggttaccccggccctcctggtccagaaggg
attcagggccctccaggtatcacaggatcattgtctgccgcacatggttttctgatcaca
cgccacagtcagaccacagacgtgccaacgtgtcctggtgatacaaaactcatctatgat
ggctattctctactctatgtgcaaggcaacgagagggcgcacggacaggacctgggtacg
gctggtagttgtctgcgtcgtttcagcacaatgcctttcatgttctgcaacatcaacaat
gtctgcaacttcgcttcccgcaatgactactcctattggctgtccacaccgcagtccatg
cccatgaacatggcgcctatcactggagagaggatcaaacctttcatcagtcggtgctct
gtgtgcgaaactccagccatggtgattgctatacacagccagaccattcaggtgccatcc
tgcccggactactgggacatactctggatcggttactccttcatgatgcacaccagtgca
ggtgctgagggctcaggtcaggctcttgcctctcccggttcctgtctggaggagttccgc
tcgtctccgttcatcgagtgccacggtcgaggcacctgcaattattacagcaactcgtac
agcttctggctggctactgtggatgtgaatgaaatgttcagaaagccgcagtcagagaca
ctgaaagctggaaacttggagacccgtgtgagccgctgtattgtgtgtatgaagaggacg
taa
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