Sinocyclocheilus anshuiensis: 107681148
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Entry
107681148 CDS
T04917
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sanh
Sinocyclocheilus anshuiensis
Pathway
sanh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sanh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107681148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sanh03021
]
107681148
03019 Messenger RNA biogenesis [BR:
sanh03019
]
107681148
Transcription machinery [BR:
sanh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107681148
Messenger RNA biogenesis [BR:
sanh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107681148
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
DUF6980
Motif
Other DBs
NCBI-GeneID:
107681148
NCBI-ProteinID:
XP_016332815
UniProt:
A0A671RLC4
LinkDB
All DBs
Position
Unknown
AA seq
1461 aa
AA seq
DB search
MSDEGAREDACREYQSSLEDLTFNSKPHINMLTILAEENIQFTKDIVAIIEAQIAKAPPG
EKLPVLYLVDSIVKNVGGEYLEVFAKNLVNSFICVFEKVDEATRKSLFKLRSTWDEIFPL
KKLYALDVRVNSIDPAWPIKPLPPNVNASIHVNPKFLKPTEETSPKPPPPQPPAQSLKQE
QLIRQQLLAKQKQLLELQQKKIELELEQTKAQLAASPAISSNHHVGAPARFNISPKVTHT
VPAPQTKPWPPAPSEKMATRDPRLNRLGATVNAKDQVMHKKESPVIPGFPTTSEKRGQVS
AERQSKLEKLRIPKKDNSAVEEKPKSKSVSPSGKGILVRPRGMESEHSKTAEVNKKDPRL
HKQMHDRTDSKDEDVREKKRSSEKKDRDEGVKNLDHQKSSSTRAKLINGSLNKHERLETF
LKQEIKVNKANVRKRSRSISRSPPLHSPKRKERRSSPKRKTRSITPPPKSGKARISKHSH
NDDAFSQSSLRDERAKKNAPEPRRSKRPLDDRAADQKDGPHLRISPAEHKDTKDSKRWRS
GWEENKHPKQSDSDLSHGRLGNQRHKTWNTNQRPSTPRIPKQHRLSVDSNIQIPEALNSA
SKRDLLRKASKSHADGEITSDEFLNVAHQINQLFQYQEERQRSDSWDESCDEGVYQSKKK
QEGAMSDAELSYLEHKSKLRRTQLQRPVQIEGQSPLDVMFYQLQREMAEQYSESSGVHKM
SGDAIKPDREDPRRTNRPPSCTGSTFRNSPSPVNLDGTFGKSTGLPFERSSSPVEMDQQP
GDISPRFESPNSVHSGTGPDDGPINVEGLSMQDNFLELGRSGQNLDESPGNTPTHSSEGS
MAQVNPPRHDGPNISQRFDRYKSSQAPFDGPPSHMREPRLDGPPRPYVPPPRYEGSTGGF
DGSGGPVRFPGHRFDAPPRFERFPKAHERPVRFNNPPVSHRPVRYTEPHNRVRFDPQAPI
HYDHPMHQNRFVNPQRFDNLHMQHGPPGYEEPRFPARLMNYDEQQGAVRFDSPSGGMRFE
NPVQPEPLIFDAPPVMPRYDPQGPPRYCGPNIPNQLRPQEPTIYDQTQGQAPVINPAVPP
PNFNMAPMNTYGGPAQQFTMQQNVSQASNFSVTGPTSSDFQGSFRPAPFPGPGVGNVPQP
IMGAQPFMPPNQISFQPGSQFQQPEPEPLRQIDVNDLLSKLISTGIIKPAQTDSTTDSTS
ASQTLSVPEEEEEEEQEEDESVPDMTGFVLEDMKLRHDSIITKLYTGIQCYSCGMRFTAS
QTDVYADHLDWHYRQNRSEKDISKKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVH
EEVVQKTQEAAKEREFQSVKAAADVVHELCEICQEQFEMYWEEEEEEWHLKNAIRVDEKT
YHPSCYEDYKNTSSFVDCTPSPNKMLTENPLTAFIKQEQGDEVSCSSIKEEPSEDNTDAP
TVKEEVQVKLEGESQTSAIIF
NT seq
4386 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaaggcgcgagggaggacgcatgccgcgagtatcagtcctcgctggaagat
ctgactttcaacagcaaaccgcacatcaacatgctcaccattctagccgaagaaaacatc
cagttcaccaaggatatcgtcgcaataattgaagcacaaattgccaaggcacctcctggt
gagaagcttccagttttgtacttagtggattccatagtgaagaatgttggaggggaatac
cttgaagtgtttgctaagaacctagtcaattcctttatttgtgtatttgagaaggtggat
gaggccactagaaaaagtctcttcaaattgcgttccacatgggatgaaattttccccttg
aagaaactatatgcactagatgtgcgtgtgaactcgatagatcctgcctggcctataaaa
ccattgccaccaaatgtgaatgccagcatacatgtcaacccaaaatttttaaaaccgact
gaagaaacatctccgaagcctcctccaccacaacctccagctcagagcctgaaacaagaa
caattgataaggcaacagttgcttgcaaagcaaaagcagttgttagaacttcagcaaaag
aagatagagcttgaacttgaacaaacgaaagctcagttggctgccagtcctgctatttct
tcaaaccaccatgtcggtgctcctgcacgtttcaatatctcaccaaaagtcactcacacg
gttcctgcaccacagaccaaaccttggcctccagcaccatcagaaaaaatggcaaccaga
gatcctagattaaacagacttggtgcaactgtaaatgcaaaggatcaagtgatgcataag
aaggagagtccggtcataccaggctttccgactacatcagaaaaaagaggacaagtctca
gctgaaagacagagtaagttggagaagttgaggattccaaaaaaggataactctgcagtt
gaggaaaagcctaaatccaagtcggtgtcaccatctggaaaaggcatccttgtcagaccc
agaggaatggagtctgagcattcaaaaactgctgaagtgaataagaaggacccaaggcta
cataagcagatgcatgacaggacagattcaaaggatgaagatgtccgagagaagaaaaga
agttcagagaagaaagatagggatgaaggtgttaaaaacttggatcatcagaagtccagc
agcaccagggccaagcttataaatggctctctaaacaagcatgaaagacttgagacattt
ctgaaacaagaaattaaagtgaacaaagcaaatgttagaaaaaggtctcggtcaatatcc
cgttcaccaccattgcattctcccaaaagaaaagagaggcgatcatctccaaagagaaaa
accaggagtattactccaccccccaagtctggaaaggctaggataagtaaacattcacat
aatgatgatgctttttcacagtcgagtcttagagatgaacgtgccaagaaaaatgcccca
gaaccaagacgatcaaaaaggccacttgatgatagagctgctgatcagaaagatggacca
catctgagaatttctcctgcagagcataaagacacaaaagatagcaagagatggaggagt
ggatgggaagagaataaacatcccaaacagtcagattcagatctctcacacggacgacta
ggcaaccagagacacaagacatggaacactaatcaaagaccgtccacacctcgtatacct
aaacagcatcgcttgagtgttgatagcaacatacaaataccagaagcacttaattctgca
agtaaacgggaccttttaagaaaggctagcaaaagtcatgctgatggtgaaataaccagt
gacgaattcctcaatgtagcccatcaaataaaccagctttttcagtatcaagaggaaaga
cagcggtctgactcttgggatgaatcgtgtgatgagggagtatatcaatcaaaaaagaaa
caagaaggagccatgtctgatgcagagctttcttatcttgagcataaatctaagttgaga
agaacacagcttcagcgtccagtgcaaatagagggccagtcacctttggatgtaatgttc
tatcagcttcaacgtgaaatggccgaacaatacagtgaaagctcaggagtgcataaaatg
tctggtgatgccataaagcctgaccgcgaagatcctagaagaaccaacaggcctccatca
tgtacaggttccacattcagaaattcaccaagtccagtcaacttagacgggacctttgga
aaatccacaggactgccatttgaacggtcatcatctccagttgaaatggatcaacaacca
ggagacatcagcccacgttttgaaagtcccaacagtgtgcactctggtacaggtccagat
gatggtcctataaatgtagagggtctttcaatgcaagataatttcttggaactgggaaga
agtggacaaaaccttgatgaatctcctgggaatacaccaacgcactcctcagaaggatct
atggcacaggtgaacccgccacggcatgatggaccaaatatttctcaacgatttgataga
tataagagttctcaagctccctttgatgggccacctagccacatgagagagccacggtta
gatggtcctccaagaccttatgttcctcctcctcggtatgaaggcagtacagggggattt
gatgggtctggtggacccgtaaggtttcctggacatcgctttgatgcccctccccggttt
gaaagatttcccaaagcccatgaaagacctgtgagatttaacaacccaccagtatcacac
aggccagtgaggtacacagagcctcacaacagggtgagatttgaccctcaagccccaatt
cattatgaccacccaatgcaccaaaacagatttgttaatccacaaaggttcgataatctt
cacatgcaacacggtcctccaggatacgaggaaccacggttcccggctagactaatgaat
tatgatgaacagcagggtgcagttagatttgatagtccatcaggtgggatgcgctttgag
aacccggtgcagcctgaacccttaatatttgatgcaccgcctgtcatgccaagatatgac
ccacaaggtcctccaagatactgcggtccaaatattccaaaccagctgagaccacaggag
ccaacaatatatgatcaaactcaaggtcaagctcctgtgataaaccctgctgttccacct
cctaatttcaacatggcacccatgaacacgtatggtggcccagcccaacagtttaccatg
cagcaaaatgtttctcaagcatctaacttcagtgtgacaggccctacatcatcggatttc
caaggttcatttagacctgctccattccctggtccaggtgttggaaatgttcctcagcct
attatgggagctcaacccttcatgccaccaaaccaaatatctttccagcctggttcccag
tttcagcagcctgagcccgagccattgaggcaaatagatgtgaacgatctgttgtcaaaa
cttatatccactggaataataaaacctgcacaaacagactcaacgactgactctacttca
gcaagtcagactttatctgtgcctgaagaggaagaggaggaggaacaagaggaagatgaa
agtgtcccagatatgactggctttgttttggaggacatgaaactgagacacgacagcatt
atcaccaaactctatacaggaatccagtgctattcctgtggcatgcgttttactgcatct
cagacagatgtgtatgcggatcatttggactggcactacaggcagaatcgttcagagaag
gacatcagtaagaaagttacacaccgtcggtggtactacagtctgacggattggattgaa
tttgaggaaattgctgatcttgaggagagggcaaagagtcagttctttgaaaaagttcat
gaagaggttgtacagaaaactcaggaagcagccaaagagagagagttccagagcgtaaag
gctgcagcagatgtcgttcacgagctgtgtgagatttgccaggagcagtttgagatgtac
tgggaggaggaagaggaagagtggcatctgaagaatgccatcagagtcgatgaaaagaca
tatcatccctcatgttacgaagactacaaaaatacatcctcctttgtggactgcacaccc
tcacccaataaaatgcttacagaaaaccctttaacagctttcataaaacaagagcagggt
gatgaggtgtcatgctccagtattaaagaagagccctccgaggacaatacagatgcacca
acggtaaaagaggaggttcaggttaagttagaaggagaatcacaaaccagtgcaattatt
ttctaa
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integrated database retrieval system
