Sinocyclocheilus anshuiensis: 107684949
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Entry
107684949 CDS
T04917
Name
(RefSeq) collagen alpha-6(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
sanh
Sinocyclocheilus anshuiensis
Pathway
sanh04382
Cornified envelope formation
sanh04510
Focal adhesion
sanh04512
ECM-receptor interaction
sanh04518
Integrin signaling
sanh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sanh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107684949
04518 Integrin signaling
107684949
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107684949
09142 Cell motility
04820 Cytoskeleton in muscle cells
107684949
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
107684949
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sanh04147
]
107684949
00536 Glycosaminoglycan binding proteins [BR:
sanh00536
]
107684949
Exosome [BR:
sanh04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107684949
Glycosaminoglycan binding proteins [BR:
sanh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107684949
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107684949
NCBI-ProteinID:
XP_016336827
LinkDB
All DBs
Position
Unknown
AA seq
1669 aa
AA seq
DB search
MKLWSFVLPVVLYAVSAQGGSKLQEPCAGRDCSGPCPCLPLKGSRGQPGELGQAGSSGPE
GFIGAPGPVGPKGEKGHVGRNGPSGPNGDKGPMGVPGFSGNDGVPGHPGQEGPRGPPGLD
GCNGTRGDPGNRARDGFPGLPGAPGVPGPKGLKGEPFYIDLSGQNFFVEGPPGPVGSSGP
MGPRGPDGFTGLSGPPGPPGPPGSPGQGYRGEPGEKGDVGSPGDPGCPLVSGVVELVGFP
KGDKGTKGDKGYDGAPGFPGRPGPPGLFGYRGETGEKGILGLPGSRGPPGLNGPPGIPGI
KGFPGTPGFPGQQGFTGPKGERGNPGPPGPIVDPVGGIKGPPGDPGFPGYPGITGDTGFP
GVPGQPGPPGQPAFVTGRPGISGFPGSRGPKGQRGNPGRNSYGPEGLPGSQGFPGPPGLP
GPPGSTSNLFSAGQPGFPGQPGPRGPPGDRGFKGFKGENGDCNCLGGGTIGAQGPQGPPG
PMGFVGLNGVKGEIGDLGFPGSRGPQGLDGRAGDRGFKGRKGEKGNSFFPEGRGQKGDMG
QQGLPGPLGASGNPGKDGSPGFPGEPGLPGEPGFGVSGDKGFPGIPGFKSRPGDRGEPGI
GYPGVAGFKGSQGDPGFNGLLGTPGPKGSPGTPLSCRIPGELGDPGYFGNPGVPGPKGQP
DSPGASGRPGFDGPKGERGEPGSGGQPGPQGFPGPRGYPGLPGITNAGLPGPPGRDGFPG
LPGAKGEPGVVLGATPGGPGSPGRPGEPGNKGQPGVPGLLGRPGNDGRNGFPGIKGERGV
DGIPGLVGPIGPPGEIPPGGVPGPRGPPGAKGFDGPPGCQGFPGLKGVRGDPGPQGPGGI
KGVPGLPGIPGSQGFRGPPGPPGIGTRPGIPGRPGVKGEKGSLGLLGFPGLPGSPGVPGG
PGVKGLPGFAGQDGLPGGTGSRGTKGERGTPGLPGPSPVLPVEQLEKGQKGEPGDGGLPG
FPGPRGDKGFPGSPGRQGFPGLPGVADQAKGFPGQPGLPGIPGSFGFPGPKGSPGVMGFP
GLPGLSGDDGVPGVQGFPGTPGQSGGKGEKGDSYELSGPPGPKGVIGNPGFPGGPGLPGE
PGDPGFPGILGFQGQKGFPGEPGAPGFGGSPGLPGIRGLPGYPGQKGRDGDLGRSGAPGS
PGEKGFPGSPGLDGLNGLPGSKGLSGVPGVTEGGRTGASGVNGLKGERGSSKPGAPGRPG
EKGSRGDTGASGLRGFPGNPGPPGPPSPSNIPGPPGDPGLPGLDGREGPLGPPGLPGLPG
PGTVQGDRGDAGLPERPGIPGPRGDPGGFGAPGFQGSPGFKGQSGDPGFSGVRGPPGFPG
EPGDYGRNGPKGLKGFPGPKGRPGTVVPRNITDSMPLGERGPPGLDGFVGQEGMPGLPGS
PGFPGPKGLRGPVGRLGPVGAAGSPGAFGDPGSPGIQGPTGTQGARGPTGMQGLPGPPAR
STGIGYTLVKHSQSSQVPMCPQGMAKLWEGYSLLYVEGQEKAHNQDLGLPGSCLPHFSTI
PFLYCTVDEICYYASRNDKSYWLSTTAPIPMMPVADQQISQYISRCSVCEAPSQAIAIHS
QDLSIPTCPQGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGT
CHYFSNKYSFWLTAVEQNEQFVQGPSQETLKGDEYRSRISRCQVCMKIL
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgaagctttggagttttgtgttaccagttgtcttgtatgcagtgtctgctcaaggggga
tcaaagctgcaggagccgtgtgcaggccgggactgcagtggaccgtgcccgtgtttgccc
ttaaagggtagcagggggcaaccaggggaacttggacaggcaggcagcagtggtcctgag
ggtttcattggggctccagggccagttggacccaaaggagaaaagggccacgtaggacgc
aatgggccctctggaccaaatggagataagggcccaatgggtgttcctgggttttctggt
aatgatggtgttccaggacaccctggtcaggaggggcccaggggacctccaggcttggac
ggctgtaatggcacacgaggtgacccaggcaacagagcccgtgatggatttcctggtctt
cctggtgctcctggagtccctggtccaaaaggtctaaaaggagaaccattttatatagat
ctttctggacaaaattttttcgtcgaaggcccgccaggtccagtgggatcttcaggtcca
atggggcctagaggtccagatggatttactggtctgtcgggtccacctggtcctcctgga
cctccaggaagtccaggtcagggatacagaggagaaccaggagaaaagggagatgtgggc
tcgcccggtgacccaggctgcccactggtcagtggagtggtggagcttgttggctttccg
aaaggagacaaaggaactaagggtgataaaggctatgacggtgctccaggttttccaggg
agaccaggaccaccaggcctatttgggtacagaggtgagactggagaaaagggaatcctg
ggcttgccaggctcaaggggtccacctggtctgaacggtcctcctgggattcctgggatt
aagggctttcctgggactcctggttttccaggacaacaaggttttaccggcccaaagggt
gaaagaggaaacccaggtccacctggaccgattgtggatccagtgggtggaattaaaggt
cctccaggtgatcctggctttcctggttatccggggataactggagatacaggttttcca
ggggttcctggtcagcctggtcctccgggacagcctgcttttgtcacaggtcgtccaggc
atctctgggttccccggtagccgtggacccaaaggacagaggggaaacccaggtcggaat
tcttatggtcctgaaggtcttcctggaagtcagggttttcctggacctccaggtctccct
ggaccaccgggcagtacatcaaacttgttttccgctggacaacctggttttccaggtcag
cctggtccaagaggacctcctggagacagaggctttaaagggtttaaaggagaaaatggt
gactgcaactgtttgggtggaggaacgattggtgcacagggacctcaagggcctccaggg
cccatgggttttgtaggactcaatggagtgaagggagaaattggtgacctaggcttccca
ggatcccgtggtccacagggccttgatggtcgtgcaggtgacagaggctttaaagggcgt
aaaggagagaaaggtaattctttcttcccagaaggcagaggacaaaaaggtgatatgggt
caacagggccttcctggaccacttggagcaagcggcaaccctggaaaggatggatctcct
ggcttccctggagaaccaggtctacctggggagcctggttttggggtgtctggagataaa
gggtttcctggtattccagggttcaaaagtcgtcccggtgacaggggtgaacctggaatt
ggctatcctggtgtagctgggttcaaagggtcacaaggtgatcctggattcaatggtctt
cttggaacacctggacctaaaggatctccaggaacacccctttcctgtaggattcctggt
gaacttggagatccaggttactttggaaatcctggggtgccagggccaaagggtcagcct
gattccccaggagcaagtgggcgcccagggtttgatgggccaaagggtgagagaggagaa
ccaggctctggaggtcagccaggacctcaggggtttcctggacccagaggatatccaggt
ttaccaggaataacaaatgctggcttaccagggcctccaggaagagatggttttccaggt
ttgccaggagctaagggagaacctggtgtggtgcttggggccactcctggaggtccaggt
tctccagggagaccaggagagccaggaaacaagggccaacctggtgtgcctggtttacta
gggaggcctggtaatgatggacgcaatggctttcctggcataaagggagaacgaggtgtg
gatggaattcctggtcttgtaggtcccataggtccaccaggagaaatccctcccgggggt
gttcctggtcccagagggccacctggagctaagggatttgatggacctccaggctgccaa
ggtttcccagggctgaagggtgtgagaggagatccagggcctcaagggcctggtggaata
aagggtgtaccaggacttcctggcatcccaggttcacagggatttaggggacctcctgga
ccccctggcattgggacacgtcccggcatacctggaagaccaggagtaaagggggagaag
gggtctcttggattgttggggttcccaggtttacctggttctcctggagtcccaggtggc
ccaggtgttaaaggtttacctggctttgctgggcaggatggcttacctggaggaactgga
tcaagaggaaccaaaggggaacgtggtactcctggtcttccaggaccctctccggtgctt
ccagtagagcagctggaaaagggtcaaaaaggtgaaccaggagatggtggactgcctggt
ttcccaggaccaagaggtgataagggttttccagggtcacctggacgtcaaggctttcct
ggattacctggtgttgcagaccaagcaaaaggttttcctggccagcctggactcccaggt
attcctggctcctttggcttccctggtcccaaaggttcacctggagttatgggcttccct
ggcttaccaggccttagtggtgatgatggtgtacctggggttcaagggttcccaggaact
ccaggacaatctggtggcaaaggtgagaaaggtgattcatatgaattatctggaccccct
ggaccaaagggtgtgattggaaatcctggattcccaggtggtccaggacttcctggtgaa
ccaggtgatcctggtttcccaggaatattgggatttcaaggccagaaaggttttcctgga
gagccgggagcacctggatttggtggctcaccaggcctcccaggcattaggggtctccct
ggttatccaggacagaaggggcgtgatggagatttaggccgttctggagctccaggttca
ccaggagagaaaggttttccaggatcacctggtttagatggactcaatggtcttccagga
tccaagggcttgtctggagttccaggtgtgactgaaggtggtcggactggagcttctggt
gtgaatggcctgaagggggagagaggctcatcaaagcccggagcacctgggcgccctgga
gaaaaaggatccagaggagacactggcgcctctggtttgagaggcttccctggtaatcct
ggcccccctggcccacctagtccttctaatatccctggtcctcccggagaccctggactt
ccgggattagatggacgagaaggtcccttaggccctcctggcctacctggtctaccaggc
cctggaacagtccaaggagacaggggagatgccggacttcctgagcgaccaggaatacca
ggaccacgtggagaccccggtggttttggagcgcctggatttcaaggcagtcctggtttt
aaaggacaaagtggtgaccctggctttagtggtgtacgtggaccaccagggttccctgga
gaaccaggagattatggcaggaatggacccaaaggattaaagggttttcccggtcctaag
ggacgtccaggtactgtggtcccacgtaacataaccgacagtatgccattgggtgaacgg
ggcccaccaggtcttgatgggtttgttggtcaggaaggaatgccaggcctgccaggcagt
ccaggattcccaggtcccaaaggactcagagggccagtgggtagacttggtcctgttggt
gcagctggatctcctggagcttttggtgaccccggatctcctggaatccaaggacccaca
ggaacccaaggagcccgtggcccaacaggaatgcaaggtcttcctggtccaccggcgcgc
agtaccggtatcggttatactttggtgaaacacagtcagtccagccaggtgcccatgtgt
ccgcaaggcatggccaagctgtgggagggctacagtttgctctatgtggaggggcaggag
aaagcacacaatcaggacctgggattgcccggctcctgcctgccgcatttcagcaccatc
cccttcctgtactgcacagtcgatgagatctgctactacgctagtcgcaatgacaaatcc
tattggctgtccaccacagcacccattcccatgatgcctgtggcagatcagcagatatct
cagtacattagccgctgctcagtgtgtgaagctccatctcaagcgatcgctatccatagc
caagacctcagcataccgacctgccctcagggctggagaagtctgtggattggttactcc
ttccttatgcacacagccgctggtgccgaaggaggcggtcagtcattggtgtctcctggc
tcttgtctggaggatttccgcgccacccccttcatcgagtgcaacggagcccgcggcacc
tgccactacttctccaacaaatacagtttctggttgaccgcggtagagcagaacgaacag
ttcgtccagggtccttcccaggagacgctgaagggagatgagtaccggtcacgcatcagt
cgctgtcaagtctgcatgaagatcttgtag
DBGET
integrated database retrieval system
