Sinocyclocheilus anshuiensis: 107685151
Help
Entry
107685151 CDS
T04917
Symbol
skiv2l2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sanh
Sinocyclocheilus anshuiensis
Pathway
sanh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sanh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107685151 (skiv2l2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sanh03019
]
107685151 (skiv2l2)
03041 Spliceosome [BR:
sanh03041
]
107685151 (skiv2l2)
03009 Ribosome biogenesis [BR:
sanh03009
]
107685151 (skiv2l2)
03016 Transfer RNA biogenesis [BR:
sanh03016
]
107685151 (skiv2l2)
Enzymes [BR:
sanh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107685151 (skiv2l2)
Messenger RNA biogenesis [BR:
sanh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107685151 (skiv2l2)
Spliceosome [BR:
sanh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107685151 (skiv2l2)
Complex C
U4/U6.U5 tri-SnRNP related factors
107685151 (skiv2l2)
Ribosome biogenesis [BR:
sanh03009
]
Eukaryotic type
Pre-60S particles
Helicases
107685151 (skiv2l2)
Transfer RNA biogenesis [BR:
sanh03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107685151 (skiv2l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Stealth_CR1
Motif
Other DBs
NCBI-GeneID:
107685151
NCBI-ProteinID:
XP_016337157
LinkDB
All DBs
Position
Unknown
AA seq
1037 aa
AA seq
DB search
MADAFGDDLFSVFDEEQAGSSKKDTPKSAAQAGKSPDNAGKQQGDSAAVRKRDADNDGPD
EVVLGKRQKLGTVSAEEINLSELMPKVKAEQVETVEGCTHEVVLPADEEYTPLKPRVGKA
AKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDITINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDSERGVVWEETIILLPDNVHHVFLSATIPNARQFAEWICHLHKQPCHVVYTDYR
PTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDAGDTGGNVGGKWDPKGRKGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTGDEKKLVEEVFNNA
TDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAM
GINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPAV
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMKK
LEEEYNAIRIPNEESVVTYYKIRQQLAKLGKEIEEFIHKPRYCLPFLHPGRLVRVKKEDL
DFGWGLVVNFHKKTNVKAGGGDADPLFVVEVLLHCSKDSVKNAATEAAKPAGPDQNGLFV
FQVVPVILHLITSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFLDGVPLLDPIDDMGI
KDPALKKVIQKVEAFEHRMYTHPLHSDPNLEAVYTLCEKKALIAGDIKATKRELKKARTV
LQMDELKCRKRVIRRLGFATSSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTTEQA
TALLSCFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEDTYLNQFRPH
LMDVVYTWANGSSFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAT
GITKIKRDIVFAASLYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgatttgttcagcgtgtttgatgaagaacaggccggttct
agcaaaaaagacactccgaagtcggccgctcaggcaggtaagagtcctgataacgcgggg
aaacagcagggtgattcagctgctgtgcgcaaaagagatgctgacaatgatggtccagat
gaggtggtgcttgggaagagacagaagctgggaacagtgtcagctgaggagatcaatctg
tcagagctcatgcctaaagtgaaggcggagcaggtggagacagtggagggctgcactcat
gaggtggttcttcctgcagacgaggaatacactccactgaaaccacgcgttggaaaagca
gctaaggagtaccccttcatactcgaccctttccagcgcgaggccatcctgtgcatcgat
aacaaccagtctgtgcttgtgtcggcccacacatcggcaggaaagacagtgtgtgctgag
tatgccattgctctggctctccgagaaaagcagcgagtgatcttcaccagccccatcaaa
gctctgagcaatcagaagtacagagagatgtacgaagagttccaggatgtgggtctgatg
accggtgacatcaccattaaccccacggcttcttgcctggttatgaccaccgagattttg
aggagcatgctgtacagagggtcagaggttatgagggaggtggcatgggtcatctttgat
gagatccattacatgagagactcagagcgtggagtggtctgggaggaaaccatcatccta
ctgccagacaacgtgcatcatgtcttcctgtcagccaccattcccaacgctcgacagttt
gctgagtggatttgtcacctccacaaacagccctgccacgtggtgtacacagattaccgg
cccactccactgcagcactacatctttccagcagggggcgatggactccacctggttgtg
gatgagaacggagagttcagagaagacaattttaacacagcaatgcaggtcctgagggac
gcgggggacacgggaggcaatgttgggggcaaatgggaccccaaaggcagaaagggtgga
accaaaggtccatctaatgtctttaagattgtgaagatgatcatggaaaggaacttccag
ccggtgatcatctttagctttagtaagaaagaatgtgaggcttacgcactgcaggtggcc
aaactggatttcaacacaggtgacgagaagaaactggtggaagaagtgttcaacaatgcc
acagactgcctgtctgatgaagacaaaaagctgccacaggtggagcatgttctgccgttg
ctgaagagaggaattggaattcatcatggcggcctcctcccgatccttaaagagaccatt
gagatcctgttctctgaggggctgctaaaggccttgtttgctacagaaacatttgccatg
ggaatcaacatgcctgcaagaaccgtactcttcaccagtgcacgcaaatttgacggcaaa
gacttccgctggatcacctctggagagtatatccagatgtcaggacgtgccggcagaaga
ggaatggatgagagaggaatagtcattttcatggtggatgagaagatgagccctgcggtg
ggcaaacagttactgaagggttcggcggatcctctgaacagtgcgtttcacctgacctac
aacatggtgctcaatttactgcgtgtggaggagatcaacccagagtacatgctggagaaa
tcgttctaccagttccagcactatagagctgtgcctggtgttgtggagaagatgaaaaag
ctggaggaggagtataatgcaatacgaatccctaacgaagagagtgtggtgacctactac
aagatccgtcagcagctggccaaactaggcaaagaaatcgaggagtttattcacaaacct
agatattgcctgcccttcctgcatccaggcagactggtcagggtgaaaaaagaagatctg
gattttggctggggtttagtcgtcaatttccacaagaagacaaatgtcaaggctggaggt
ggtgatgccgacccgttgtttgtggtggaggttctgcttcactgcagcaaagacagcgtg
aaaaacgcggccacagaggcagccaaaccagcaggcccagatcagaacggtttgtttgtc
tttcaggttgttcctgtgattctacatctcatcacctccattagctctgtgcgcctctac
atccccaaagacctgcggccgtacgacaaccgacagagcatgctcaaatccatacaggag
gtgcagaaacgtttcctagatggcgttcctctgctagatcccatagacgacatgggtatc
aaggatccagcgctgaagaaggtcattcagaaggtggaggcgttcgagcacaggatgtac
acgcaccccctgcacagtgaccccaacctggaggccgtttacactctgtgtgagaagaaa
gcgctgattgcaggcgacattaaagcgacgaagcgcgagctaaaaaaagcacgtaccgtg
ctgcagatggacgagctgaagtgcaggaagcgtgtgatacggcgcctgggattcgccact
tcctctgatgtcatcgagatgaaaggccgtgtggcctgtgagatcagcagtgcagatgag
ctgctgctgacagagatggtgtttaacgggctgttcaacgacctgacgacggagcaggcc
accgcgctcctcagctgctttgtcttccaggaaaacgctaacgagatgcccaaactgacg
gagcagctggccggaccgctgcgacagatgcaggaatgtgccaagcgtattgctaaggtg
tctgcagaggccaagctggaagtggatgaggacacttacctgaaccagttccgcccgcac
ctgatggatgtggtctacacctgggccaatggctcctcgttttctcagatatgcaaaatg
acagacgtttttgaaggcagtattatccgctgcatgcgcagattggaggagctcttgagg
cagatgtgccaggcagccaaggccattggaaacacagagctggagaataagtttgccacg
ggtataacgaagattaagagggatatcgtgtttgctgctagtctttacctgtga
DBGET
integrated database retrieval system
