Sinocyclocheilus anshuiensis: 107685698
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Entry
107685698 CDS
T04917
Name
(RefSeq) symplekin-like isoform X1
KO
K06100
symplekin
Organism
sanh
Sinocyclocheilus anshuiensis
Pathway
sanh03015
mRNA surveillance pathway
sanh04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
sanh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107685698
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
107685698
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sanh03021
]
107685698
03019 Messenger RNA biogenesis [BR:
sanh03019
]
107685698
Transcription machinery [BR:
sanh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107685698
Messenger RNA biogenesis [BR:
sanh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
107685698
U7-dependent histone pre-mRNA processing factors
107685698
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
GNC1_N
Cohesin_HEAT
Adaptin_N
Rep_Org_C
Motif
Other DBs
NCBI-GeneID:
107685698
NCBI-ProteinID:
XP_016337871
UniProt:
A0A671P433
LinkDB
All DBs
Position
Unknown
AA seq
1250 aa
AA seq
DB search
MASGVGEQAHGSVASQFSSNEKDTAFDMTTSEKVVELLNQAALISTEEKLIVLKQVQELI
INKDPSLLDNFLDEIIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLMRDES
VNVVKKAILTLTQLYKVALQWLVRTKSVSDMQEPCWDMVTQMKEDVLALLDSDNDGVRTH
AIKFTESLIITLSPRTHDSDTPKKQEGDISLDKIPKDHTYIRYDTLCEEGKLALEQLLKF
MVHPAISSINLTTALGSLATLARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLK
LHLVSVLKHPSSVDFQGQISTLLLDLGMSQSEITRCTPATVQPRKRLHHEPYVEGKRIKM
EATLVEDDDDKEEPAPVVTPKPSSSAGTQSSIDLTAEFLLPLLNPENVANLVLISMVYLP
EVMPASFQSTYTPVESAGTDAQIKHLARLMATQMTAAGLGPGLELCKARDEEVKEEDGGA
GESSSKDPLIIRKLSAVSLGQAISVVGAQLAAYKSPVTEEAPQIKKLPEPILPTTQPKAP
GASGRKKVFKLADVVQPFSEAQIEKLANMAIKRILQSEKAIAQSGKSHVRVKLLARLVTQ
FEDGKKNYLLQFILEDMRGRSELAFSLLFHEYNEYLSQQPSGSLDSYEHCLFTLLSGLQE
KPEQRDGLFTKLVLEAPVITDSALEVIQCYCEDESRVYLGMSTLKELILKRPSRQYQYLN
VLLNLSSHEKEKVRSTALSFIKRMYEKEHLKDCIEKFALTYMQFLVHPNPPSLLFGAGED
TEVAAPWTEETVRQCLYLYLSLLPLNHRLVHELAAVYTEAIADIKRSVLRVIEQPIRGMG
MSSPDLLLLVEDCPKGAETLVTRCLHILTDKVPPSPELAERVRDLYHKRVPDVRFLIPVI
NGLEKNEVIQALPKLIKLNPIVVKEVFNRLLGTQHSEGSSSMSPLTPGELLIALHNIDSS
KCDMKSIIKATNLCFGEKNVYTSEVLAVVMQQLMEQTPLPILLMRTVIQSLSMYPRLAGF
VMNILARLILKQVWKYPKVWEGFVKCCQRTKPQSYNVLLQLPPPQLASVFERCPEMREPL
LQHVHSFTPHQQALIPASIMAVLEANSRKPEPEPQAELHHPEIIEEREVPVPKHISMPAP
VSQVEPPAPTPIVFTEPPPTQQQQQIPARREEEEEEPMEQREMDHAALEVTSEAASQQME
VSEEASQSNSISEKTDEPMEESAAMPVDAPDQPKDESEDVVPEAEESSVD
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaggtgtgggagaacaagcgcatggtagcgtggcctcccagttctccagcaat
gagaaggacacagcctttgacatgaccaccagcgagaaggtggtggaattgttaaaccag
gcagcactcatctctacagaggaaaagcttattgttctcaaacaggtgcaggagttgatt
atcaacaaggacccttcattgcttgataattttctggatgaaatcatcgcatttcagact
gataagtcaattgaggtgcgaaagtttgtcatcggattcattgaggaggcatgtaaaaga
gacaatgagcttctgctgaggctgattgccaacctgaacatgctgatgagagatgagagt
gtgaatgtggtgaagaaggccattctgacactcactcagctatacaaagtggctttacag
tggctggtgcgcactaagagtgtctcggacatgcaggagccatgctgggatatggtgacc
cagatgaaagaggacgttctggcattgctagactccgataacgacggagttcgcactcac
gccatcaaattcactgagtccctcatcatcactctgtcaccacggacacatgactctgat
acgcccaagaaacaggagggagacatcagcctggacaaaatccccaaagaccacacgtat
attcgatatgacaccttgtgtgaggagggaaagttggctctggagcagttgttaaagttt
atggtgcaccctgccatctccagcattaatctcaccactgcacttggatcactggctacg
ctggccagacagcggcccatgttcatgtctgaggtggtgcaggcatatgagacgctacat
gctaacttgcccccgactctggctaagtctcaagtgagcagtgtgcgcaagaacctgaag
ctgcacttggtctcggtgctgaagcaccccagcagcgtggacttccagggccagatttcc
actctgctgctggaccttggtatgtctcagagcgagatcacccgctgcacgccagccacg
gtacagccccgtaagagactccaccatgagccctatgtcgagggcaagaggatcaagatg
gaggccactctagtggaggatgatgatgataaggaagaaccagctccagttgtcacccca
aaaccatcctcctccgctggcacccaatcatccatcgatctcactgctgagttcctgttg
cctctgctgaacccagagaatgtggccaacctggtgctcatcagtatggtttacctgcct
gaagtgatgccggcctctttccagtccacctacacacctgttgaatcggccggcactgat
gctcagatcaaacatttagccaggctgatggccacacagatgactgcggctggactggga
ccagggctggagctgtgtaaggctcgagatgaagaggtgaaggaggaagacggcggagcg
ggtgagtccagctccaaagaccctctcatcatccgcaaactgtctgctgtgtccctgggt
caagccatctcagtggtgggggcgcaactagcagcctacaagagccctgtcaccgaagag
gcacctcagatcaagaagcttcctgagcctatactgcccaccacacagcccaaagctcct
ggggccagtggcagaaaaaaagtgttcaaattggctgacgtggtgcagcctttctcagag
gctcagatcgagaaactcgccaacatggccatcaagcggatccttcaatcagaaaaggcc
attgcacagagtgggaagtcccatgtccgtgtgaagttgcttgcacggttggtgacccag
tttgaggatgggaagaaaaattacttgttgcagtttattttggaggatatgcggggcaga
agtgagctggccttttctctgctgttccatgagtacaatgaatacctgagtcagcagccc
tcgggctctctggacagctatgagcactgtctgttcacactgctgtccggcctgcaggag
aaacctgagcagagggatgggcttttcaccaagcttgtgttggaggctccggtcattaca
gactctgcactggaggtgattcaatgctactgtgaggacgagtcacgtgtttacctgggc
atgtccacattaaaggagcttatcctcaaacgcccctccagacagtaccagtacctcaat
gtccttctgaacctcagctctcacgaaaaagaaaaggtgcggtccactgctctcagcttc
atcaagcgcatgtatgagaaggaacatctgaaggactgcattgagaagttcgctctcacc
tacatgcagtttctggtccacccaaacccaccttctcttctgtttggagcaggggaggat
acagaggtggcggctccctggacagaggagacagtgcggcagtgtctttacctctatctc
tccctccttcccctcaaccatcgtctggtgcacgagctggctgccgtctacaccgaggcc
atcgccgacatcaaacgcagtgtgctcagggtcattgaacagcctataagaggaatggga
atgagctctcctgacctgctgctcctggtggaggactgtcctaaaggagcggagacgctg
gtcactcgctgtctgcacatactcactgataaagtgcctccatctcctgagctggcggag
agggtgagggatctttatcataagcgagtgccagatgttcgtttcctcatcccagtgatc
aatggcctggagaagaacgaggtgatccaggctctacccaaactcatcaaactcaatccc
atcgtggtgaaggaggtgttcaacagactgctgggcacgcaacacagtgagggcagttcc
tccatgtctccgctaactcctggagagctcctcatcgccttacacaacattgactcctcc
aagtgtgacatgaagtcaatcatcaaagccactaacctgtgttttggggagaagaacgtg
tacacctccgaggtgctggctgtggtgatgcagcagctgatggagcagacccctctcccc
atactgctgatgcgtacggtcatccagtccctctctatgtaccctcgcctggccggtttc
gtcatgaacatcctagcccgactcattctcaaacaggtgtggaagtatcctaaagtgtgg
gagggctttgtaaagtgctgccagcgcaccaaaccccagtcctacaacgttctcctccag
ctgcctccaccacaactggctagtgtgtttgagcgctgcccggagatgagggagcccctc
ctacagcacgttcactccttcacccctcaccaacaagccctcattccagcatctataatg
gccgttctggaggccaacagcaggaagccagaaccagaaccacaagctgaacttcatcat
ccagaaataatagaagagcgagaggtgccagtaccaaagcatatatcaatgcctgcacca
gtatcacaagtagaacctccagccccgactcccatagtgtttactgaaccaccaccaact
caacaacaacaacagatcccagccaggagggaagaagaagaagaagagcccatggagcag
agagagatggaccatgctgctctggaggtcacgtctgaagccgcatcgcagcagatggag
gtgtctgaggaggcttcacagtccaactccatttcagagaagacagacgaacccatggag
gagtcagctgcgatgcctgtggatgcgcctgaccaacccaaagatgagtctgaggatgtg
gttccagaagcagaagaaagcagtgtggactga
DBGET
integrated database retrieval system