Sinocyclocheilus anshuiensis: 107686493
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Entry
107686493 CDS
T04917
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sanh
Sinocyclocheilus anshuiensis
Pathway
sanh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sanh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107686493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sanh03019
]
107686493
03041 Spliceosome [BR:
sanh03041
]
107686493
03009 Ribosome biogenesis [BR:
sanh03009
]
107686493
03016 Transfer RNA biogenesis [BR:
sanh03016
]
107686493
Enzymes [BR:
sanh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107686493
Messenger RNA biogenesis [BR:
sanh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107686493
Spliceosome [BR:
sanh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107686493
Complex C
U4/U6.U5 tri-SnRNP related factors
107686493
Ribosome biogenesis [BR:
sanh03009
]
Eukaryotic type
Pre-60S particles
Helicases
107686493
Transfer RNA biogenesis [BR:
sanh03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107686493
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Stealth_CR1
Motif
Other DBs
NCBI-GeneID:
107686493
NCBI-ProteinID:
XP_016339013
LinkDB
All DBs
Position
Unknown
AA seq
1051 aa
AA seq
DB search
MSFPARGLRVALWELCLFEVMADAFGEDLFSVFDEEQAGSSKKATPKSAAQAGKTPDKGG
KQQSDSAAVHKRDADNDGPDEEVLGKRQKLETVSAEEINLSELMPKVKAEQVETVEGCTH
EVVLPADEEYTPLKPRVGKATKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAE
YAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEIL
RSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHHVFLSATIPNARQF
AEWICHLHKQPCHVVYTDYRPTPLQHYVFPAGGDGLHLVVDENGEFREDNFNTAMQVLRD
AGDTGGNAGGKWDPKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVA
KLDFNTDDEKKLVEEVFNNATDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETI
EILFSEGLLKALFATETFAMGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRR
GMDERGIVIFMVDEKMSPAVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEK
SFYQFQHYRAVPGVVEKMKKLEEGYNAIRIPNEESVVTYYKIRQQLAKLGKEIEEFIHKP
RYCLPFLQPGRLVRVKKEDLDFGWGIVVNFQKKTNVKAAVGDAEPLFVVEVLLHCSKDSV
KNAATDARIRERGINSVYAHCLKCDSLCAQLRMCVNGLKHLNKHMTASGCGFQEVQKRFP
DGIPLLDPIDDMGIKDPALKKVIQKVEAFEHRMYTHPLHSDPNLEAVYTLCEKKALIAGD
IKAAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEM
VFNGLFNDLTAEQATALLSCFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKL
EVDEDTYLNQFRPHLMDVVYTWANGSSFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAA
KAIGNTELENKFATGITKIKRDIVFAASLYL
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttccggcacgcggcctgcgcgtcgcactgtgggagttgtgtctgtttgaagtc
atggcggacgcctttggagaagatttgttcagcgtgtttgatgaagaacaggccggttct
agcaaaaaagccactccaaagtccgcagctcaggcaggaaagactcctgataaaggcggt
aaacagcagagcgattcagcagctgtgcacaaaagagatgctgacaatgacgggccagat
gaggaggtgctcgggaagagacagaagctggaaacagtgtcagctgaggagatcaatctg
tcagagctcatgcctaaagtcaaggcggagcaggtggagacagtggagggctgcactcat
gaggtggttcttcctgcagacgaggaatacactccactgaaaccacgcgttggaaaagca
actaaggagtaccccttcatactcgaccctttccagcgtgaggccatcctgtgcatcgat
aacaaccagtctgtgcttgtgtcggcccacacatcggcaggaaagaccgtgtgtgcggag
tatgccattgctctggctctccgagaaaagcagcgcgtgatcttcaccagccccatcaaa
gctctgagcaatcagaagtacagagagatgtacgaagagttccaggatgtgggtctgatg
accggtgacgtcaccattaaccccacggcttcctgcctggttatgaccaccgagattttg
aggagcatgctgtacagagggtcagaggttatgagggaggtggcgtgggtcatctttgat
gagatccattacatgagagactcggagcgtggagtggtctgggaggaaaccatcatcctt
ctgccggacaacgtgcatcatgtcttcctgtccgccaccattcccaacgctcgacagttt
gccgagtggatttgtcaccttcacaaacagccctgtcacgtggtgtacacagactaccgc
cccactccactgcagcactacgtctttccagcagggggcgatggactccaccttgttgtg
gatgagaacggagagttcagagaagacaattttaacacagcaatgcaggtcctgagggat
gcaggggacacgggaggcaatgctgggggcaaatgggaccccaaaggcagaaagggtgga
accaaaggtccatccaatgtctttaagattgtgaagatgatcatggaaaggaacttccag
ccggtgattatctttagcttcagtaagaaagaatgtgaggcctacgcactgcaggtggcc
aaactggatttcaacacagacgacgagaagaaactggtggaagaagtgttcaacaacgcc
acagactgcctgtctgatgaagacaaaaagctgccacaggtggagcatgttctgccgttg
ctgaagagaggaattggaattcatcatggcggcctcctcccgatcctgaaagagacaatt
gagatcctgttctctgaggggctgctaaaggccttgtttgctacagaaacatttgccatg
ggaatcaacatgcctgcaagaaccgtgctcttcaccagtgcgcgcaaatttgacggcaaa
gacttccgctggatcacctctggagaatatatccagatgtcaggacgtgctggcagaaga
ggaatggacgagaggggaatagtcattttcatggtggatgagaagatgagccctgcggtg
ggcaaacagttactgaagggttcggcggatcctctgaacagtgcgttccacttgacctac
aacatggtgctcaatctactgcgtgtggaggagatcaacccagagtacatgctggagaaa
tccttctaccagttccagcactatagagccgtgcctggtgttgtggagaagatgaaaaag
ctggaggaggggtataatgcaatacgaatccctaatgaagagagcgtggtgacctactac
aagatccgtcagcagctggccaaactgggcaaagaaattgaggaatttattcacaaacct
agatactgcctgcctttcctacagccgggcagactggtcagggtgaaaaaagaagatctg
gatttcggttggggtatagtcgtcaatttccaaaagaagacaaatgtcaaggctgcagtt
ggggatgctgagccgttatttgtggtggaggttctgctccactgcagcaaagacagcgtg
aagaacgcggccacggatgcaaggatacgcgaaagaggaatcaattctgtgtatgcgcat
tgtctgaaatgcgactctctgtgcgcgcagctccgaatgtgcgtgaatggattaaaacac
ttaaataaacacatgactgcttctggttgtggtttccaggaggtccagaaacgtttccca
gatggcattcctctgctagatcccatagacgacatgggtatcaaggatccagcgctgaag
aaggtcattcagaaggtggaggcgttcgagcacaggatgtacacgcaccccctgcacagt
gaccccaacctggaggccgtttacactctgtgtgagaagaaagcgctgattgcaggcgac
attaaagcggcgaagcgtgagctaaagaaagcacgtaccgtgctgcagatggacgagctg
aagtgcaggaagcgtgtgctgcggcgcctgggattcgccacttcctctgatgtcatcgag
atgaaaggccgtgtggcctgtgagatcagcagtgcagatgagctgttgctgacagagatg
gtgtttaacgggctgttcaacgacctgacggcggagcaggccactgcgctcctcagctgc
tttgtcttccaggaaaacgctaacgagatgcccaaactgacggagcagctggccggaccg
cttcgacagatgcaggaatgtgccaagcgtattgctaaggtgtccgcagaggccaagctg
gaagtggatgaggacacttacctgaaccagttccgcccgcacctgatggatgtggtctac
acctgggccaacggctcctcattctctcagatatgcaaaatgacagatgtgtttgaaggc
agtattatccgctgtatgcgcagattggaggagctcttgaggcagatgtgccaggcagcc
aaggccattggaaacacggagctggagaataagtttgccactggtataacgaagattaag
agggatatcgtgtttgctgccagtctttacctgtga
DBGET
integrated database retrieval system
