Sinocyclocheilus anshuiensis: 107694345
Help
Entry
107694345 CDS
T04917
Name
(RefSeq) spliceosome RNA helicase DDX39B-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sanh
Sinocyclocheilus anshuiensis
Pathway
sanh03013
Nucleocytoplasmic transport
sanh03015
mRNA surveillance pathway
sanh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sanh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107694345
09122 Translation
03013 Nucleocytoplasmic transport
107694345
03015 mRNA surveillance pathway
107694345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sanh03019
]
107694345
03041 Spliceosome [BR:
sanh03041
]
107694345
Enzymes [BR:
sanh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107694345
Messenger RNA biogenesis [BR:
sanh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107694345
Spliceosome [BR:
sanh03041
]
Complex C
Other components
EJC/TREX
107694345
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107694345
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
107694345
NCBI-ProteinID:
XP_016349517
UniProt:
A0A671P1A9
LinkDB
All DBs
Position
Unknown
AA seq
450 aa
AA seq
DB search
MGENDVWVFSHSLHRMTENDVENELLDYEEDEVDAGGVGDTGLGHNDGGIAIRKEGVKGS
YVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAV
FVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDE
EVLKRESPHVVVGTPGRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQRMTRMT
PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKL
FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQR
RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAR
TLNDVQDRFEVNISELPEEIDISSYIEQTR
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaaatgatgtatgggtcttttcccactctctccacaggatgacggagaacgac
gttgagaacgagctgttggactatgaggaggatgaggttgatgcaggtggtgtcggagac
acaggacttggacacaacgatggtggaatagccatcaggaaagaaggggtcaaagggtca
tatgtgtccatccactcctcaggattcagagatttccttctcaaaccagaactgctgaga
gctatagtggactgtggctttgaacatccatctgaagttcagcatgaatgcattcctcag
gcgatcctggggatggatgtattatgtcaggccaagtctggaatggggaagacggctgtc
tttgtgttggctacccttcagcagctggagccagtgaccgggcaggtatcagtgttggtg
atgtgtcacacccgagagctggccttccagatcagcaaagagtacgagcgcttctccaaa
tacatgcccagtgtcaaggtggcagtgttctttggtggcttatctataaagaaggacgag
gaggttctgaagagagagagccctcatgtggtggtgggaactcctggacgcattctagct
ctgtctcgcaacaagagtctcaacctgcgccacatcaagcacttcatcctggacgaatgc
gacaagatgctggagcagcttgacatgcggcgtgatgtccagcgtatgacccgtatgacc
cctcacgagaagcaggtcatgatgttcagtgccaccctgagtaaagagatccgtcccgtc
tgcagaaagttcatgcaagatccgatggaaatttttgtggacgacgaaaccaagctgacg
cttcacggcctccagcagtactatgtcaagctgaaggacaacgagaagaacaggaagctc
tttgacctcctggacgtgttggagttcaatcaggtggtgatctttgtgaagtccgtgcag
cgttgtattgctctggctcagttgctggtggagcaaaatttccctgccattgccattcat
agagcaatgcctcaagacgaaagattagctcgatatcagcagttcaaggatttccagaga
cggatcctggtggccacaaacctgtttggccgaggtatggacatcgaaagagtcaacatc
gccttcaactacgacatgcctgaagattcagacacatacctgcacagggttgcgagggcc
ggtaggtttggaacgaaaggtctggccatcacctttgtgtcagatgagactgacgcccgc
actttgaacgatgttcaggacaggtttgaggtgaacatcagcgaacttccagaggagatt
gacatctcttcatacattgaacaaacacgataa
DBGET
integrated database retrieval system
