Sinocyclocheilus anshuiensis: 107699598
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Entry
107699598 CDS
T04917
Name
(RefSeq) collagen alpha-1(XX) chain-like isoform X1
KO
K24357
collagen type XX alpha
Organism
sanh
Sinocyclocheilus anshuiensis
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
FN3_Tor_3rd
NDNF
YjeF_N
Motif
Other DBs
NCBI-GeneID:
107699598
NCBI-ProteinID:
XP_016356391
LinkDB
All DBs
Position
Unknown
AA seq
1570 aa
AA seq
DB search
MTAHSFSLVPSERTTLILVTVLLMLVSEVHCQGRLKLTVLSEDRLQMKWKEAEGLVQGYK
VRVRPITEVPQPELMLTTIRGRATVAGLDPRQEYLLQVMVLNGTQEKLIAKRRFTVDGLR
EEELIRSGNREQKKKTHSIGSGSGEVDDVTEALAAFPTVLYREPATTESPAVPELEPEVD
RNTKEKKKKKDKNRSKTEDKNDQEGNGGKSVREEVTITNKPRKPTSTQTVTAVSTRKPFE
CSAGAQADLVLLVDGSWSIGRTNFRKVRDFLEGLAVPFHIGPQGVQIALSQYSGDPRTEW
HLNNFTSREPLLEAIRNFRYKGGNTFTGQALIHALENNLKKEVGARPNTPQFLLLLTDGK
SQDDAIAAANRLKNSGIEIIAIGVKNADEAELRQVASEPLELNVYNVNDFPLLSKLVGRL
ARILCGKIEDRIKAKRIERPTQDPVLSYPSPTDLQYVGLGSREVRLHWTVPSKRPQQYRV
VYHTAEGQSLKEVVVNGTDSTALLTGLSSQTQYHLSIFPVYENNVGSALRGTFTTLPLAI
PEALEVTASSPNSLRVRWQPAAGATQYMALYSALNDGEPDDAKEVKFGPAQTDVELVDLM
PSTDYSVTLYALYDEDPSDPITAIGTTFPLPSPLSLQFPMVSHSTLKITWVPGAVDVPAH
RIIYSTNHGSDVKQVEVKGVNTVLLQNLSSLSRYLVSVQSLYEKGLSTPITANVTTLRVP
APSDLRVTNFSGSDLTVRWEAAADDVVSYLIKWISLSEGDLRQLTVDGESEGAILEEVEE
DKEYQISLSALYADGAQSEAVAIRYSTLSGGGPSSLSISEETAVSMLVTWVHPNAHVLQY
RVSYTPLNGDVRENTVSLPGSERRVLLQNLLPDTRYSVLVTAEYRNREGGSASAQGKTTS
LRVSSVSVVRSDHSSICVSWRPVPAVSGYRIVIQALRDKQTKEDKVDAASSSHCFSELQP
ETVYRISVHSHLGTVEGTAVTILHPTATAPVRIQVPPQLHPIQREVCPETTIRNHVVKGF
DMMEAFGLTPRAHSTIEGVAAEPFIFSTLPSYTLYRDVQLTQSTSFIHPAGFSPEHTISM
AFRLLQDSPREPFALWQLTDNDFQPKMGVVLDPEKKVLLYFSLDYRGEIQELTFDQPQVH
SVFYGSFHKIHLSVSQVSISLSVDCQRVGERPARPLGTLPTDGFEMLGKLVRTRGPHSGS
AAFQLQSFEIVCNTTWVSEDNCCDLPSQRDEESCPAPAYECTCTTDVPGAPGDTGPPGRP
GPRGEKGEKGEVGQKGEVGPPGKSGPEGGFGALGPSGPRGITVMGKVGPPGARGEKGDIG
RPGSQGLPGPPGPKGEEGMAGPKGTRGMEGNIGSPGIPGPRGFQGMPGHPGPVGERGLLG
SVGPTGLSGSKGERGEKGEPQSLTMIYQLVTQACEKLVHNEVLKLDAFLNEMNRKPVPIQ
EPVAPPGEPGIPGGRGPPGSRGPQGRQGSRGESGKPGYPGEQGRRGVAGEKGSPGANVVG
QQGIKGFAGPPGETKIGEPGSKGEDGKAGPLGIPGASGQQGEMGPPGICDSSGCYQGPPA
AEDPYLGYQP
NT seq
4713 nt
NT seq
+upstream
nt +downstream
nt
atgacggcccacagcttttctctcgtcccatcagagcgaacgacactcatcctggtgaca
gtcctcctgatgctggtttctgaagtccattgccagggccggctgaagctgactgttctg
tctgaagatcggctgcagatgaaatggaaggaggcggaagggctggtgcagggctataag
gtccgtgtgcgacccatcacagaggttcctcagccagagctgatgctcacaaccatacgc
ggccgtgcaacagtggcaggcctggaccccagacaggagtatctcctccaagttatggtg
ctcaatgggacacaggagaagctcattgcaaaaagacgcttcactgtcgatgggttgcgt
gaggaagagctgatccgtagtgggaacagagagcagaagaaaaaaactcactccattggt
tctggatctggagaggtggatgacgtgactgaggctctagcggcctttcccactgtgctc
taccgagaaccagcgactacagagtctcctgctgtacctgagcttgagccagaagttgac
agaaacaccaaagaaaagaaaaagaagaaagacaagaatcgatccaagaccgaggataaa
aatgatcaagaaggaaatggagggaagtcggtgagagaagaggtcaccatcaccaacaaa
ccgagaaaacccacctcaacccaaactgtcacagctgtttccacacgaaagccgtttgaa
tgcagtgctggagctcaggctgatctggtccttttggtagatggatcctggagcatcggc
cgcacaaacttcagaaaagtgcgtgacttcctggagggcctggctgtcccctttcacatt
ggaccacagggtgtgcaaatagcattatctcagtacagtggagatccacgtacagagtgg
catcttaataacttcacttctagagagccgctcctggaggccatcaggaacttcagatac
aagggaggcaacactttcacaggtcaggctctcatacatgctcttgagaacaatctgaag
aaggaggtgggggcacgacccaacaccccacagttcctgctgctgctgactgatgggaaa
tctcaggatgatgctattgctgcagccaacaggctgaagaattccggcatagagatcatt
gctataggtgtgaaaaatgcagatgaggcagagttgaggcaggtggcgtctgaaccgctg
gagctaaatgtgtataatgtgaatgattttcctctgctcagtaaactggtgggaagacta
gcacgcatcctctgtggcaagattgaagaccgcattaaagcgaagagaatagagcgtccc
actcaggacccagttctgtcctatcccagcccaactgatctgcagtatgtaggactaggc
tcaagagaggtgcgcctgcattggaccgtccccagcaaaagacctcagcaatacagagtg
gtgtaccacaccgctgaaggacagagtctgaaagaggtggtggtgaatggaactgactcc
acagctctgctgacaggactgtcttcacagacacaataccacctgtccatctttcctgtc
tatgagaacaatgtgggctctgctttgagaggcaccttcaccacattaccattggcgata
cctgaggctctagaggtcaccgcttcctcccctaacagtctgcgggtgcgctggcagccg
gccgcaggagccacacagtacatggccttatattcagcactcaatgatggagagcctgat
gatgccaaagaggttaagtttggacctgctcagacggatgtggagttggtggatctgatg
ccatccacagattattcagtcacactttatgctctgtatgatgaggatcccagtgaccca
atcacagccatcggcaccaccttcccattgccatctcctctcagtttgcagtttcccatg
gtcagtcacagcactctgaagatcacgtgggtccctggagctgtagatgttcctgcacac
cgcatcatctacagcaccaatcacggcagtgacgtcaagcaggtggaggtcaaaggtgtg
aacacagtgttgctgcagaatctgtcttccctctctaggtatctggtgtcagtgcagtct
ctctacgaaaagggcctgtccactcctatcacagccaatgtcactaccttaagggtccca
gctccctcagatctgagagtcactaacttctctggcagtgacttaacagtgcgatgggaa
gctgcagcagatgacgtggtctcctatctcatcaaatggatctctctcagtgaaggagac
ctcagacagttgacagtagatggggagagtgagggggcaatcttggaagaggttgaagaa
gataaggaatatcagatttcactctctgcattatatgccgatggtgctcagagtgaggct
gtggccatacgatacagcaccttatctggaggcggtccgagcagtttatccatttcagag
gagacagcagtcagtatgctggtcacctgggttcaccccaacgcccatgtgctgcagtac
cgtgtgtcatacactccacttaatggggatgtgagggaaaacacagtgtcattgccaggc
agcgagaggcgcgtcctgctgcagaatctgctgcctgacactcgttacagtgtgctggtg
actgctgagtaccgcaacagagagggtggcagcgcctcagcacaggggaagaccactagc
ctgcgggtgagcagtgtgagtgtggtgcggtctgaccactccagtatatgtgtgtcctgg
aggcccgtaccagctgtcagtggttatcgcattgtcatccaggctctcagagataaacag
actaaggaagacaaagtagatgctgctagcagcagccactgtttctctgagctgcagcct
gaaactgtctaccgcatcagtgtgcactcccatctgggaacagtagagggcactgcggtc
actatccttcaccctacagcaaccgctccagtgagaattcaggttcctcctcaactgcat
cccatacaaagagaagtgtgtcctgagacaacaatcagaaatcatgtggttaaaggcttc
gacatgatggaagcattcggtctaactccgagagctcactctactatcgagggtgtggca
gctgaacctttcatcttcagcaccttacccagttacaccctctacagagacgtacagctg
acccagagcacaagcttcatccacccggctggcttttctccagaacacaccatcagcatg
gccttcaggctcttgcaggattcacccagggagcccttcgccctctggcagctcacggac
aatgacttccagcccaagatgggggtggtgctggaccctgagaagaaggttctgctgtat
ttcagtctggactacagaggagagatacaagaactgacctttgaccagccacaagtccac
tcagttttctatggcagctttcataagatccatttgtccgtcagtcaggtgagtatatct
ctgtctgtagactgccagcgggttggcgagaggcccgcacgccccctgggaactttgccc
actgatggttttgagatgttgggcaaactagtgaggacacgtggacctcacagtggatct
gcggcttttcagctgcagtcctttgagattgtgtgcaacactacttgggtatcagaagac
aactgctgtgatctgccctcacagagagatgaggagagctgtcctgcccctgcttatgaa
tgcacctgcaccaccgacgtccctggagcacctggagacactgggccacctgggagacct
ggccctcgtggggagaagggagaaaaaggagaggtgggacaaaagggagaggtgggtcca
cctggtaaatcgggccctgagggcggctttggcgctcttggaccctctggtcctcgggga
ataactgtaatgggcaaagtgggcccaccaggagcaagaggggaaaaaggagatattgga
aggcctgggagccagggtttaccagggcctcctggtccaaaaggtgaagagggcatggct
ggtcctaagggcaccagaggaatggagggtaatatcggtagcccaggaatcccaggacca
agaggtttccagggtatgcctggtcatccagggccagtgggagagagagggctattaggt
tctgtagggcccacaggtctttctggaagtaagggtgagagaggagagaagggtgagcca
cagtctcttaccatgatctaccagcttgttacacaggcctgcgaaaaacttgtgcacaat
gaagtcctgaagttggatgcttttctgaacgagatgaatcgaaagccagtgcccatccag
gaaccagtagcaccaccaggagagcctgggataccagggggaagggggccacctggatcc
cgaggccctcagggtcgacaaggaagcagaggagagtctgggaaaccagggtaccctggt
gagcagggacgcagaggggtggctggtgagaaaggctctccaggagcaaatgtggtggga
caacaaggaataaaaggttttgcaggacctccaggtgaaactaaaataggggaaccaggt
tccaaaggtgaggatggtaaagcaggacctctaggtattccaggagcttcaggtcagcaa
ggagaaatgggaccccctggtatatgtgacagcagtggatgttatcaaggacccccagct
gcagaggatccctaccttggataccagccttga
DBGET
integrated database retrieval system
