Sinocyclocheilus anshuiensis: 107704742
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Entry
107704742 CDS
T04917
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
sanh
Sinocyclocheilus anshuiensis
Pathway
sanh04382
Cornified envelope formation
sanh04510
Focal adhesion
sanh04512
ECM-receptor interaction
sanh04518
Integrin signaling
sanh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sanh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107704742
04518 Integrin signaling
107704742
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107704742
09142 Cell motility
04820 Cytoskeleton in muscle cells
107704742
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
107704742
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sanh04147
]
107704742
00536 Glycosaminoglycan binding proteins [BR:
sanh00536
]
107704742
Exosome [BR:
sanh04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107704742
Glycosaminoglycan binding proteins [BR:
sanh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107704742
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107704742
NCBI-ProteinID:
XP_016363216
LinkDB
All DBs
Position
Unknown
AA seq
1652 aa
AA seq
DB search
MDSCLILRATLLGMMLLGLLTPAQTKAGCVCSVKSGCNCQGIKGQKGEMGLPGLPGVEGI
QGHRGKEGFPGFPGDNGNIGFPGMPGPKGSRGVSGTPGFSGPPGLPGFPGKEGPRGPHGL
PGCNGTKGEPGPPGLIGPMGAPGWQGMPGIQGPKGDSYYLQPSGQVKGLCGFPGRDGDKG
SLGLPGLPGSFGPEGPRGFSGIDGIPGPQGEKGLEGRSMGIPGPTGQKGERGPPGVPGQK
GVKLFVTGPKEPKGDTGDPGDIGCPGPIGFRGRSGPKGKKGEIGEPGGPGKPGKDGLTGE
SGPKGIPGDRGYPGLTGIAGEKGLKGDSGAPGVPGEFTVIDNGIKGQKGFPGPPGPHGLR
GSEGFIGIPGYAGPPGDSIPGPIGKPGSPGFRGVKGERGDPAPNSTGPKGQDGPPGEQGP
PGDPGPPGIPKANTRLGAKGFKGDRGLTGPQGLRGDPGKPGEQGELCKLCATSVADPGPP
GQRGDSGDPGEPGVGGYPGNKGCQGFKGPDGPPGPPGNLGLPGPPGHSGPKGDLDMRHVL
GEKGQKGNCGAEGPLGINGQDGRPGTPGFKGPPGAKGNLSPTGPKGNQGDPGICGERGRT
GPMGSQGSMGVGRPGAPGEKGSMGVVGRQGNPGEPGEEGSPGPVQMTPGNPGEPGLPGPP
GQQGSPGNDGCGGLQGLPGFSGLKGEKGPSMPGAPGFTGPKGDKGVKGKQGPPGYGSVGR
PGPPGPPGNPGPKGEISFGSPGPKGRQGLPGDEGGLGQPGISGPPGLSGCPGQRGRDGPP
GENGVRGPDGLPGVAGVPGYCTPGAKSDEGPLGIKGLDGPSGLPGLKGPQGETGPPGQGV
PGITGEIGIPGKIGDAGLVGIRGSNGFQGRDGSPGFPGTRGDQGSPGMTGPPGVDGNPGP
PGFPGPKGLMGRNGVPGDIGKLGNPGDRGACGLKGLPSNVMSPGDPGDPGLPGLLGLPGT
KGELGLPGNYGQCGKNGVSGRPGPPGPPGDAGQNGLPGNRGPDGYFGDPGVMGFPGVKGF
KGLPGVRGETGTPGVPGPIGPKGIKGEPSPSGPGPQGQPGEKGKPGFPGRRGEKGDKGIY
GTSGPPGLSGAPGESGERGVPGVPGPPGAPGDEGLNGFPGPPGCEGPCGPPGVPGSAGDP
GPPGLRGDQGNDGFPGPAGDKGDRGPPAIGDLGPPGIKGEKGTKGCSGPAGPCGPPGPYG
PAGDIGPPGQLGEMGPHGFPGPPGACINGPKGEQGPNGAPGLQGLRGPRGPAGDPGPGVK
GDKGNIGPQGLVGSPGCAGDRGVPGLQGNDGDPGFKGPKGNMGPLGSTGPVGQKGQCGPI
GCTGLKGCKGTAGTKGPKGCDVVAQVMTLPGDPGFPGQVGGKGEPGERGPQGLQGPEGTQ
GQRGSRGANGGVGRKGTPGPKGDTGLKGTKGFPGLSGEVGPKGSQGPPGTKDGFLFTKHS
QKTSVPACPPGSKRVYFGYSLLFINGNNRGHGQDLGTVGSCLQMFSTMPFLVCNPNDTCY
YAFRNDYSYWLSTDTQMSPNMELISGELLANYISRCSVCEAPANVIAVHSQTTEIPECPR
GWLPLWKGYSFVMQTSAGAEGSGQPLISPGSCLEEFRKIPFIECHGRGTCNFYPDSFSFW
LASLDPSRMFSTPIRQTARQQDISRCQVCMKQ
NT seq
4959 nt
NT seq
+upstream
nt +downstream
nt
atggattcttgcctaatattgcgagcgacacttctcggaatgatgttgctgggacttctt
actcctgcacaaactaaagcggggtgtgtttgcagtgtgaaatcagggtgcaactgtcaa
ggaatcaaaggacaaaagggtgagatggggttacctggtttgcctggtgtggaaggaatt
caggggcatcgaggaaaagaaggctttcctggatttcccggtgacaatggaaatattgga
tttccaggcatgcctggacctaaaggttctaggggagtttcagggacaccaggattctct
ggcccaccaggactaccggggttccctggaaaagaggggccgagggggcctcatggtctc
ccaggatgcaatggaacaaagggtgagcctggtcccccaggcttaatagggccgatgggt
gctcctggatggcagggaatgccaggaatccaaggacctaagggagatagctattacttg
caaccctctggacaggtgaaaggactttgtggttttccaggcagagatggagataaaggg
tcactgggattgccagggttaccaggatcatttggaccagaggggcctagaggtttttca
ggaatagatggcattcctggaccacaaggagagaagggtctagagggtcgaagcatggga
atacctggacccacaggtcaaaagggggagagaggaccacctggtgtaccaggacaaaaa
ggcgtaaagttatttgtaacaggaccaaaggagcctaagggtgacactggggatcctgga
gacattggatgtcctggcccaattggttttcgtggtcgttctggtcctaaggggaagaaa
ggggaaattggggagcctgggggtccgggaaaacccggaaaggatgggctgacaggagag
tcaggccctaagggaatccctggagaccgaggatatccaggacttactggaatagcaggg
gaaaagggtctaaagggtgacagcggtgcccctggtgtccctggagagttcactgtaata
gataatgggatcaaaggtcagaaaggttttcctgggcctccaggacctcatggtctacga
ggtagtgaaggtttcattggaattcctggatatgcgggtcctccaggggacagcatacca
ggacctattggaaaaccaggttccccagggtttagaggtgtgaaaggggaaagaggagat
cctgctcctaacagcacaggacccaaaggacaagatggcccaccaggggagcaaggaccc
cctggtgaccctggacctccgggaattccaaaagccaacacccgcctgggagcaaaaggg
ttcaagggtgacagaggcctaacaggccctcagggtctgcgtggagatcctgggaaacca
ggcgagcaaggagagctttgtaagctttgtgctacttctgttgctgaccctggacctcca
ggacaacgtggagattcaggcgaccccggagagccaggtgttggaggatatccaggcaat
aaaggatgccaaggattcaaaggtccagatggtccacctggtcctccgggtaacttaggt
cttccaggacctccagggcattcagggcccaaaggagacctagatatgaggcatgtgctt
ggggagaaaggccagaaaggaaactgtggtgcagaaggaccattggggataaatgggcaa
gatggcaggccgggcacccctggcttcaaaggaccaccaggagcaaaaggaaatctaagt
cctacaggccctaagggcaaccaaggagatccagggatttgtggggaacgtggccgcaca
ggtccaatgggcagccaagggtcaatgggtgttgggcgaccaggggcacctggagagaaa
ggaagtatgggagtagttggccggcaaggaaatcctggagaaccaggtgaggaaggatct
ccaggtccagtacaaatgacaccaggaaacccaggtgagcctggactgcctggtccacct
ggtcaacaaggatctccaggtaatgatggttgtggaggacttcaaggattaccaggattc
agcgggttaaaaggagagaaaggaccatcaatgccaggagctccaggatttactggtccc
aaaggtgataagggtgtgaaagggaaacaaggtccacctggttatggaagtgtaggccgt
cctggacccccaggaccaccaggaaatccaggtccaaagggtgaaatatcatttggctcc
ccggggcccaagggtcggcagggcttgccaggagatgaagggggccttgggcaaccagga
atttctggcccccctggattatcaggatgtccaggtcaaagaggaagggatggaccacca
ggagaaaatggtgtgcggggtcctgatggtttgcctggagtggctggtgttcctgggtac
tgtacgccaggagccaaaagcgatgaagggcccttaggcattaaagggctagatggaccc
agtgggctgccagggctgaaggggccacaaggtgaaactggaccacctggacagggtgta
cctggtataacaggtgaaattggaatacctggaaaaatcggagatgctggtttggttggt
atccggggatcaaacggtttccaaggtcgggatggttcaccaggctttccaggtacgcgg
ggagatcagggaagtcctggaatgactggtccacctggagtagatggaaatcctggacca
ccgggattcccgggacccaaaggtttaatgggtaggaatggagtgccaggtgacatagga
aaactcgggaatccaggagaccgtggggcttgtggtctcaagggactgccatcaaatgtt
atgagtccaggggatcctggtgaccctggcctaccaggtcttcttggtctacctggcact
aaaggggaattaggactcccaggcaattatggacaatgtgggaagaatggcgtttcaggc
agacctggtccaccaggccctcctggtgatgctggccagaatggacttcctggaaatcga
ggtcctgatggatactttggggatccaggagttatggggtttccaggagtgaaaggcttc
aaaggtttacctggtgttcgtggggagactgggactcctggtgtcccaggaccaattgga
ccaaaggggatcaaaggtgaacccagcccctctggaccagggcctcaaggacaacctggt
gaaaagggtaagccaggctttccagggcgtagaggggaaaagggtgacaagggtatatat
gggacgagcgggcccccaggtttatcaggggctcctggtgaaagcggcgaacgtggagta
ccaggagttccaggaccccctggagctccaggtgatgaaggtttaaatgggtttccaggt
ccacctggatgtgaagggccctgtggtccaccaggtgttcctggttcagctggagatcct
gggcctccaggacttcgtggagaccaaggcaatgatggctttcccggaccagcaggggat
aaaggagacagagggcccccggcaattggagatcttggcccacctggcatcaagggtgag
aaaggtactaaaggctgttctggacccgcagggccatgtggaccaccaggaccctatggt
ccagctggagatattggtcctccaggtcaacttggggaaatggggccacacgggtttcca
ggaccacctggtgcctgtatcaatggtccaaaaggggagcaaggacctaatggagcacct
ggcctacaaggactcagaggaccacgtgggcctgctggcgacccaggtccaggcgtaaag
ggagataaaggcaacatcgggccccaggggcttgtgggatcacctggttgtgctggtgac
cggggagttccagggttgcaaggtaacgatggagatcctggtttcaagggtccaaaagga
aatatggggccattgggttctactgggccagtcggccaaaaaggacaatgtggtccaatt
gggtgtactggattaaaaggttgtaaaggaactgccggaactaaagggcctaaagggtgt
gatgttgtggctcaggtcatgactctcccaggagaccctggcttccctggacaagtcggg
ggaaaaggagaaccaggagaacgaggacctcaagggctacaaggtccagaaggaacacaa
ggtcaaaggggaagcagaggtgcaaatggaggtgttggacgaaaggggacacctggacca
aagggagacactggcctaaaaggaacaaaaggttttcccggtttgtcaggcgaagtgggt
cccaagggttcacaaggtccacctggaacaaaagacggattcctttttaccaagcatagc
cagaaaacatctgtaccagcctgtcctcctgggtcaaaacgtgtgtactttggatattca
cttctcttcatcaatggcaataaccgcggacatggacaagacctaggaactgtgggaagc
tgtttgcaaatgttctccaccatgcctttcctggtgtgcaatcccaacgacacatgttac
tatgcctttcgaaatgattactcctattggctgtctacagacacacaaatgtctcccaac
atggaattgatatctggtgaattgttggctaattatatcagcaggtgttcagtatgtgag
gcaccagctaatgtaatagcagtccacagccagaccacagaaatcccagagtgccctaga
ggatggcttccactatggaaaggttactcctttgtaatgcaaacaagtgcaggtgcagaa
ggttccggacagccgctgatttctcctggatcctgtttggaagaattccggaagattcca
ttcatagagtgtcatggccgtggcacctgtaacttctatcctgattccttcagcttttgg
cttgcatcacttgatcctagcagaatgttcagtactccaatccgccagacagcaagacag
caagacatcagccgctgtcaggtctgtatgaagcagtag
DBGET
integrated database retrieval system