Streptococcus anginosus SA1: DK43_00065
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Entry
DK43_00065 CDS
T03658
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sans
Streptococcus anginosus SA1
Pathway
sans03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sans00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DK43_00065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sans03400
]
DK43_00065
Enzymes [BR:
sans01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DK43_00065
DNA repair and recombination proteins [BR:
sans03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DK43_00065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
MFD_D3
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIK76804
LinkDB
All DBs
Position
complement(12318..15824)
Genome browser
AA seq
1168 aa
AA seq
DB search
MDKKMDIIELFNQNKQIADWQRNLSKSTRQLLMGLSSSTKAVTMASCVEENHKILILTST
YSEAERLSSDLIELLGEEKVYTFLADDTPLAEFVFSSQEKIFSRLEALDFLLDSQQSGFL
IVNVAASQLFLPDPVNFNSAYIDLKIGQEYELKDLIHQLSNSGYKQVSQVFNQGEFSLRG
DILDIFERSSQIPFRVEFFGDEVDGIRLFNPENQISIQNVEHVHIHPATDIIFTKADYKS
AQKKIENLIEKTVDSASKSYLEEILASTKEQIQHTDIRKLLSYFYQNEWTILDYLPKHSP
IFFDDFQKIMNRHAQFQLEVANLLTEDLQTSKSVENQSYFADTYLIFRKYKPATFFSNFH
KGLGNLKFDSLYQFNQYPMQEFFSQFQLLKEEISRYKKSNYTVIIQSNSLLTLQSLHKSL
QEYEIPLDYVNDTKIHKHAVQLVEGRLIQGFNFVDEKIVLITEYDILQKKVKRKVRRQSI
SNAERLKNYNELEKGDYVVHNVHGIGRYLGIETIEISGIHRDYLTIQYQNADRISIPVDQ
IHLLSKYVASDGKAPKINKLNDGRFQKTKQRVQHQVEDIAEDLIKLYSERSQLKGFAFSS
DDSYQQEFDNDFPYVETEDQLRSIKEVKKDMESDHPMDRLLVGDVGFGKTEVAMRAAFKA
VNDHKQVAILVPTTVLAQQHYTNFKERFNDFPINIEVLSRFKSKSEQKIILEKLKKGQVD
IIIGTHRLLSKDIVFADLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHM
SMLGIRDLSVIETPPTNRYPVQTYVLENNATVIRDAVLREMDRGGQVYYLYNKVDTMEQK
VSELKELIPEASIGYVHGQMSEILLENTLLDFINGEYDILVTTTIIETGVDIPNVNTLFI
ENADYMGLSTLYQLRGRIGRSNRIAYAYLMYRPDKILTEISEKRLETIKGFTELGSGFKI
AMRDLSIRGAGNILGSSQSGFIDSVGFEMYSQLLEEAIAKKQGKEKRRQKGNAEINLQID
AYLPSDYITDERQKIEIYKRIREIDNRVNYEELQNELIDRFGEYPDVVAFLLEIGLVKSY
LDQAFVQLVEKKQQSVIVRFEKVSQQFFLTQDYFEALSVTNLKARISENKGLIEVIFDVK
NKKDYEILEGLLQFSEKLVEIKNQKKNC
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaagatggatattattgaattatttaatcaaaataaacagatagctgattgg
caaagaaatctaagtaaatcaactcggcagttattaatgggtttgtcatcttcaactaag
gctgttacaatggcctcttgtgtagaggagaatcacaaaattttgattttaacgtctact
tatagtgaagcagaaagactttctagtgacttgattgaattgttgggagaggaaaaagta
tatacatttcttgcagatgatactccgttagctgagtttgtcttttcttctcaagaaaag
attttttctcgtttagaagctttagattttttattagattctcaacaatcgggatttttg
atagttaatgtggcagctagtcaactatttttacccgatcctgttaatttcaattcagct
tatattgatctaaaaatagggcaagaatatgaattaaaagatttgattcatcaattgtca
aattcgggttataagcaagtatcacaagtgtttaatcaaggggaattcagtcttcgtggt
gatattttagatattttcgagcgctctagtcaaataccttttcgggttgaattttttggt
gatgaagttgatggtattcgtctatttaatcctgaaaatcaaatttctattcaaaatgta
gaacatgtgcatattcatcctgctacagatatcatatttactaaagcagattataaaagt
gcacagaaaaaaatagaaaatcttatagaaaaaactgtagattcagcttcaaaatcttat
ttagaggagattttagctagtacaaaagaacaaattcaacatactgatattagaaaatta
ttgtcttatttttatcaaaatgaatggacaattcttgattatcttccaaaacatagccca
attttctttgatgattttcaaaaaattatgaatagacatgctcagtttcaattagaagta
gcaaatttattgacagaagatttacaaactagtaaatcagttgaaaatcaatcttatttt
gcagatacatatttaatatttagaaagtataaaccagctaccttcttttcaaattttcat
aaaggactgggaaatttaaaatttgattctctttatcagttcaatcagtatcctatgcag
gaattttttagtcaatttcagcttttgaaagaagaaattagtcgatataaaaaatctaac
tacacagttattatacaatcaaattctttattgactttacaaagtttacataaaagttta
caagaatatgaaattccacttgattatgttaatgatactaaaattcataaacatgctgtt
caattagtagaaggacgtttaattcaaggatttaattttgtagacgaaaaaattgtttta
atcactgaatatgatattctgcaaaaaaaagtaaaacgaaaagttcgcaggcaaagtatt
tctaatgctgaacgtttgaaaaattataatgagctggaaaaaggagattatgttgttcat
aacgttcatggaattgggcgatatttaggaattgagacgattgaaatttcaggaattcat
cgtgattatctcactattcaatatcaaaatgcagatcgtatttctattcctgttgatcag
attcatctactttctaaatatgttgcaagtgatggtaaagcgcctaagatcaataaatta
aatgatggacgttttcaaaaaactaaacagagagtacaacatcaagttgaagacattgct
gaggatttaattaaactttactcagagagaagtcaattaaagggatttgcgttttctagt
gatgattcttatcagcaagaatttgataatgattttccttatgtagaaacagaagatcag
ttgcgttctataaaagaagttaaaaaagacatggaaagtgatcatcctatggaccgtctt
ttagttggggatgttggttttgggaagacggaagtagctatgagagctgcttttaaagca
gtaaatgatcataaacaagtggcaattttagttcccactacggttttagctcaacagcac
tatacgaactttaaggagcgttttaacgattttcctatcaacattgaagtattaagtcgt
tttaaaagtaaatcagaacaaaaaataattttagaaaaattaaaaaaagggcaggtggat
attattattggaacgcatcgtctcctgtcaaaagatattgtatttgctgatttaggactc
attgttattgatgaggagcaacgttttggagttaagcataaagaaaaattaaaagagttg
aaaacaaaagttgatgttttaactttgacggcgacccctattcctcgtacactccatatg
tctatgttaggtatacgtgatttatcagttattgaaactcctccaacaaatcgctaccca
gttcaaacttatgttttagaaaataatgcaacagttattcgagatgcagttttaagagaa
atggatcgaggaggacaggtttactatctttacaataaagttgacacaatggagcaaaaa
gtttcagaattgaaagaattgattccagaagcttctattggatatgtacatggtcaaatg
agtgaaattcttcttgaaaatactttacttgattttatcaatggggaatatgatattttg
gtgacaacgactattattgaaactggtgttgatattcctaatgttaatactctttttatt
gaaaatgcagattacatgggattgtcaactttatatcaattaagagggcgtattggtcgt
agtaatcgtattgcttatgcctatctcatgtatcgtcctgacaagattttgacagaaatt
tctgaaaaacgtttggaaactataaaaggatttacagaattaggctctggttttaaaatt
gctatgcgagatttatctattcgtggtgctggaaatattttaggaagttcacaatctggt
tttattgattctgttggctttgaaatgtattctcaattattagaagaggctattgctaaa
aaacaaggtaaagaaaaaagaaggcaaaaaggaaatgctgaaattaatttgcagattgat
gcctatcttcctagcgattacattactgatgaaaggcagaaaattgagatttacaaacgt
attcgcgagattgacaatcgtgtaaattatgaagaattacagaatgaattgatagatcgt
tttggagaatatccagatgttgttgcctttttattagaaattggccttgtaaagtcttat
ttagatcaagcttttgtccagcttgttgaaaaaaagcaacaatctgtgattgtccgattt
gaaaaggtttctcaacagtttttcttaactcaagattactttgaagctctttctgtgaca
aatttaaaagcaagaatttcagaaaataagggattgattgaagttatatttgatgtaaaa
aataaaaaagattatgaaattttagaaggacttttgcagttttcagaaaaattagtagaa
attaaaaatcaaaagaaaaattgctaa
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