Sanguibacter sp. HDW7: G7063_07530
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Entry
G7063_07530 CDS
T06485
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sanw
Sanguibacter sp. HDW7
Brite
KEGG Orthology (KO) [BR:
sanw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sanw03016
]
G7063_07530
Enzymes [BR:
sanw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
G7063_07530
Transfer RNA biogenesis [BR:
sanw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
G7063_07530
Prokaryotic type
tRNA splicing ligases
G7063_07530
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QIK83491
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Position
1620306..1621529
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AA seq
407 aa
AA seq
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MNEFPVTLSGARAPTLMWTYEHDVEPAALQQLRNIAGLPWVEGLRVMPDVHLGKGATVGS
VIAMRDAVSPNAVGVDIGCGMIGVRTSLTADDLPDNLGPLRAAIEAAVPVGWKGHAEPVN
LARLRPVANGAGMSETLRGADAFWSRFDGLHGRVSDIEGKVRRQLGTLGGGNHFIELCVD
ESGQLWLQLHSGSRNLGKTLAEQHVAIAKRLPHNDGLVDRDLAVFLGGTPEMDAYLADLR
WAQEYAARSRAVMMALVVDVVRTHLAAAAPTFDEAVNVHHNYVAVETVDGTDLVVTRKGA
IRAGTGELGLIPGSMGTGSYVVRGLGNPASYWSASHGAGRRMSRTAARKRFTAADLAAQT
AGVECRKDEGVVDEIPAAYKDLDAVVAAQSDLVEVVARLTTLLCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagttccccgtgacgctctccggagcgcgcgcccccaccctcatgtggacctac
gagcacgacgtcgagcccgccgccctccagcagctccgcaacatcgccgggctgccctgg
gtcgagggcctgcgcgtcatgcccgacgtccacctcggcaagggtgcgaccgtcggctcc
gtcatcgccatgcgcgacgccgtctcacccaacgcggtcggcgtcgacatcggctgcggc
atgatcggcgtccgcacgtcgctcacggccgacgacctccccgacaacctcgggcccctg
cgtgccgcgatcgaggccgcggtgcccgtcggctggaaggggcacgcggagcctgtcaac
cttgcgcgcctgcgtccggtcgcgaacggcgcgggcatgtccgagacgctgcgcggtgcc
gacgccttctggtcgcgcttcgacgggctccacggccgggtctccgacatcgagggcaag
gtgcgtcgccagctcggcacgctcggcggcggcaaccacttcatcgagctgtgcgtcgac
gagtccgggcagctgtggctgcagctgcactccggctcgcgcaacctcggcaagacgctc
gccgagcagcacgtcgcgatcgcgaagcggcttccgcacaacgacggcctcgtcgaccgg
gacctcgccgtcttcctcggcggcacgcccgagatggacgcgtacctcgcggacctgcgc
tgggcgcaggagtacgcggcgcgctcgcgcgcggtcatgatggcgctcgtcgtcgacgtc
gtccggacgcacctcgccgcggccgccccgacgttcgacgaggccgtcaacgtccaccac
aactacgtcgcggtcgagacggtcgacggcacggacctcgtcgtcacccgcaagggcgcg
atccgcgccggcacgggcgagctcgggctcatccccggctccatgggcacgggttcctac
gtcgtgcgtgggctcggcaatcccgcgtcgtactggtcggcgtcgcacggcgcgggacgc
cgcatgtcccggacggccgcgcgcaagcggttcacggccgccgacctcgcggcgcagacc
gcgggcgtcgagtgccgcaaggacgagggagtcgtcgacgagatccccgccgcgtacaag
gacctcgacgctgtcgtcgccgcccagtcggacctcgtcgaggtcgtcgcccgcctcacg
acccttctgtgcgtcaagggctga
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