Sanguibacter sp. HDW7: G7063_09790
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Entry
G7063_09790 CDS
T06485
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sanw
Sanguibacter sp. HDW7
Pathway
sanw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sanw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G7063_09790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sanw03019
]
G7063_09790
03009 Ribosome biogenesis [BR:
sanw03009
]
G7063_09790
Enzymes [BR:
sanw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
G7063_09790
Messenger RNA biogenesis [BR:
sanw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G7063_09790
Ribosome biogenesis [BR:
sanw03009
]
Prokaryotic type
rRNA processing factors
G7063_09790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QIK83885
LinkDB
All DBs
Position
complement(2126481..2129924)
Genome browser
AA seq
1147 aa
AA seq
DB search
MTLDNDATTGSSSAPAPRTRRRATRTVAAPGAAETAAPQADVTAPATVAPAADDSAADAP
APRRATSTRTRSAAKKTTADAPVADAPAADAAPAAAEKPAKPARRRAGRASGPAEGVAQT
LDAAVAESAPAEEKVVAEKPAAKKSAAKATEAAAEAPAEKKPARRRSTRAAAAAEGTEPA
VPAAEVPAEAEAPAEKPAKTRAAAKGSRSTKAARTAPAEVVPAEAPAAEPEVVEVAAEVP
TTTPARRSRRAAGRPAGAPDAAKAQAAEASAPTEAAPAEAPAQEEKAETSAKAPARSRSS
RSRAAKTAVAPVEAAEVEEAPATRLPMTALLFQAPDASKAPRRRRAQSTSGAPAPVVEPP
AEDEVEETEVVEDVDAETTDADDTTDEDASEESDDSSDDEGGAPRRRRRRGGRGRRRSGS
GQNGEASQNGDAEQDGDTEEPFDDGAAEPADASDEAASEDSDEQAEGSSSRRRRRRRRSG
DSDGEPRQRRSSGSSTSSDEVTALKGSTRLEAKRQRRREGRDAGRRRQIITEAEFLARRE
AVERSMIVREKDGRTQIAVLEDGVLVEHYVSQAEQASMVGNVYLGRVQNVLPSMEAAFID
VGKGRNAVLYAGEVNWDAAGLEGQPRRIEQALKSGDPVLVQVTKDPIGHKGARLTSQITL
AGRYLVYVPGGGMTGISRKLPDTERARLKKLLRELVPDTAGVIVRTAAEGASEEELRADI
ARLQDQWEKIEKKSKSGNAPVLLQGEPDMAIRVVRDIFNDDFSSLVVQGTDAWDAISTYV
GELAPDLAERVTRWTEERDVFAGHRIDEQLAKGMDRKVWLPSGGSLVIDRTEAMTVVDVN
TGKFTGSGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLV
ECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSTTCEHCHGRGFIVHAEPVEKGNG
GNGGNSGNSGQQASEQQGESKRSRRKRGGATKEEQAPAAPAVPVLPAARAEVSATLAAIA
AAAAHAHTDEPTADAPAAEAPVAEVPVAEVAADEAPAAEETAPAAVEPVEAPVVEEIVLD
LPEPATKPRTARGRGSRRVTASGRAADREAKATEAKAPATDASAGEEARPRLDVLAELAQ
VRREDLH
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgactctcgacaacgacgcgaccaccggatcctcatcggctcccgcgccgcggacccgt
cgccgcgcgacccgtacggtcgccgcccccggagccgccgagaccgctgccccgcaggcc
gacgtgaccgctccggccacggtcgcccccgctgctgacgactcggccgccgacgcgccc
gcgccccgccgcgccacctcgacgcgcacgcggtccgccgcgaagaagaccacggccgac
gctcctgtcgccgacgcccccgcagcggacgctgcccccgcggccgccgagaagccggcc
aagccggcgcgccgccgcgcgggccgtgcctcgggccccgccgagggcgtcgcgcagacg
ctcgacgccgcggtcgccgagagcgcccccgccgaggagaaggtcgtcgcggagaagccc
gccgcgaagaagtctgccgcgaaggccaccgaggctgccgccgaggctccggccgagaag
aagcccgcgcgtcgtcgctcgacgcgtgccgctgctgccgccgagggcaccgagcccgcc
gtcccggctgctgaggttcctgctgaggccgaggcccccgccgagaagcctgcgaagacc
cgcgccgccgccaagggctcccgctcgacgaaggccgcgcgcaccgcgccggccgaggtc
gtgccggccgaggcccccgccgccgagcccgaggtcgtcgaggtcgccgccgaggtgccc
acgacgacgcctgctcgccgctcgcgtcgcgccgccggccgccccgccggtgcacccgac
gccgcgaaggcgcaggccgccgaggcttccgctccgaccgaggccgcgccggccgaggcc
cccgcgcaggaggagaaggccgagacctcggccaaggctcccgcgcgttcgcgctcctcg
cgctcgcgtgccgccaagactgccgttgcgccggtcgaggccgccgaggtcgaggaggct
cccgcgacccgcctgccgatgaccgcgctgctcttccaggcgcccgacgcgtcgaaggcc
ccgcgccgccgccgcgcgcagtcgacctccggcgcccccgcgcccgtcgtcgagcccccg
gccgaggacgaggtcgaggagaccgaggtcgtcgaggacgtcgacgccgagacgaccgac
gccgacgacaccacggacgaggacgcgtcggaggagtccgacgacagctctgacgacgag
ggtggcgctccgcgccgccgacgccgccgtggcggccgtggccgccgccgttcgggctcc
ggccagaacggcgaggcgagccagaacggcgacgccgagcaggacggtgacaccgaggag
cccttcgacgacggcgcggccgagccggccgacgcgtccgacgaggcggcctccgaggac
tccgacgagcaggccgagggctcctcgagccgtcgccgtcgtcgccgtcgccgctcgggc
gactccgacggcgagccgcgccagcgccgctcgtccggctcgtcgacctcgtccgacgag
gtcacggcgctcaagggctcgacccgcctcgaggcgaagcgccagcgtcgtcgcgagggc
cgcgacgcgggccgtcgccgccagatcatcaccgaggccgagttcctcgcgcgccgcgag
gccgtcgagcgctcgatgatcgtccgcgagaaggacggtcgcacgcagatcgcggtcctc
gaggacggcgtcctcgtcgagcactacgtctcccaggccgagcaggcctcgatggtcggc
aacgtctacctcggccgcgtccagaacgtgctgccgagcatggaggccgcgttcatcgac
gtcggcaagggccgcaacgccgtgctgtacgcgggcgaggtcaactgggacgccgcgggc
ctcgagggccagccgcgccgcatcgagcaggcgctcaagtccggcgaccccgtgctcgtc
caggtgacgaaggaccccatcggccacaagggtgcgcgcctcacgtcgcagatcaccctc
gccggccgctacctcgtctacgtccccggcggcggcatgacgggcatctcccgcaagctc
cccgacaccgagcgtgcgcgtctcaagaagctcctgcgtgagctcgtccccgacaccgcg
ggcgtcatcgtccgcaccgcggcggagggcgcgagcgaggaggagctgcgcgcggacatc
gcccgcctgcaggaccagtgggagaagatcgagaagaagtcgaagagcggcaacgcgccc
gtcctgctccagggtgagcccgacatggcgatccgcgtcgtccgcgacatcttcaacgac
gacttctcctcgctcgtcgtccagggcacggacgcgtgggacgcgatctcgacgtacgtc
ggtgagctcgctccggacctcgccgagcgcgtcacgcgctggaccgaggagcgcgacgtc
ttcgcgggccaccgcatcgacgagcagctcgccaagggcatggaccgcaaggtctggctg
ccgtcgggcggctcgctcgtcatcgaccgcaccgaggccatgacggtcgtcgacgtcaac
acgggcaagttcacgggctcgggcggcacgctcgaggagaccgtgacgcgcaacaacctc
gaggccgcggaggagatcgtccgccagctgaggctccgtgacatcggcggcatcatcgtc
atcgacttcatcgacatggtgctcgagtccaaccgtgacctcgtgctgcgtcgcctcgtc
gagtgcctcggccgcgaccgcaccaagcaccaggtcgccgaggtcacgtcgctcggcctc
gtccagatgacgcgcaagcgcgtcgggcagggcctcgtcgaggccttctcgacgacgtgc
gagcactgccacggccgtggcttcatcgtccacgccgagcccgtcgagaagggcaacggc
ggcaacggcggcaacagcggcaacagcggccagcaggcctccgagcagcagggcgagtcg
aagcggtcgcgtcgcaagcgtggcggcgcgacgaaggaggagcaggcgcccgcggcgccc
gccgtccccgtcctgcctgccgcgcgtgccgaggtgagcgcgacgctcgccgcgatcgcg
gcagcggccgcgcacgcgcacaccgacgagccgacggccgacgcgccggcagccgaggcc
cccgtggccgaggtgcccgtcgccgaggtcgccgcggacgaggcccctgcggccgaggag
acggcccccgcagccgtcgagccggtcgaggcccctgtcgtcgaggagatcgtcctcgac
ctccctgagcccgcgacgaagccccgcaccgcccgcggtcgtggctcccgccgggtcacg
gcgagcggccgcgccgcggaccgcgaggcgaaggccaccgaggcgaaggcccctgcgacc
gacgcatcggcgggggaggaggcgcgcccgcgcctcgacgtcctcgccgagctggcgcag
gtccgccgcgaggacctgcactga
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