Spiroplasma apis: SAPIS_v1c00440
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Entry
SAPIS_v1c00440 CDS
T02945
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sapi
Spiroplasma apis
Pathway
sapi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sapi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAPIS_v1c00440 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sapi03021
]
SAPIS_v1c00440 (rpoC)
03400 DNA repair and recombination proteins [BR:
sapi03400
]
SAPIS_v1c00440 (rpoC)
Enzymes [BR:
sapi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAPIS_v1c00440 (rpoC)
Transcription machinery [BR:
sapi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAPIS_v1c00440 (rpoC)
DNA repair and recombination proteins [BR:
sapi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAPIS_v1c00440 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AHB35891
UniProt:
V5RIF4
LinkDB
All DBs
Position
42779..46543
Genome browser
AA seq
1254 aa
AA seq
DB search
MGNPNKRMIKIELASPDVIRSWSRGEVTKPETINYKTLKTEKEGLFDERIFGPTKNYECS
CGKYKKVKNKGKVCERCGVEITESIVRRERMGHIELEEPVTHIWMLKVAPSRIASILDLK
TKEVEEVVYFVSHIVLDPGNSRHLKRGQVLDLGNAKASLKTREKLLKTLEDIKVNLEPES
LQWKRAEILIQQLKSPQTPFSMDEAASFISRNIQAKFGIGASAIEELLSNIDLSKEIAKI
KEDLKERKGSTEQNKLMKRLEVLDSLQKSQSRPEWMILHVIPVIPPDIRPIIQLDGGRFT
TSEINDLYRRIIIRNERLKKVKTMGAPSIIVNNEKRMLQEAVDALLDNERKPRPVTGKDK
RALKSLTSILKGKQGRFRQNLLGKRVDYSGRSVIAIGPDLKMYQAGIPRDMAITLFKPFV
IRRLQENELAENVKVAEKMIAANDSKVWDVLEEVIKDRPVLLNRAPTLHRLGIQAFEPKL
VKGKAIRLHPLVTTAFNADFDGDQMAVHLPISDEAVAEARALMLGSKAILGPKDGKPIVT
PTQDMILGNYYITTEEKSNETNQVKGEATIFSSCEEVHIAYETDTVSLNAIVAIPVSELK
NKMFSQEDQDKYLITTVGKIIFNQMFNEEFPWIVNNNILNAEEEIKKFLLPSDIDLRKYI
QEEYVIQQPIKKKELSLIIERYFKAYGAQKTAQMLDNMKDLGFKYSSKSGTTISAADVVA
YTEKFEDFKIADEKVAQITEFYNLGMLTKTEKKRRVINVWSQVKDKIQTKLEDVLKKDTK
NPIFVMADSGARGNVSNFTQLVGMRGLMNDPKGDIKEIPIKSSFREGLTVSEYFISTHGA
RKGMADVALKTADSGYLTRRLVDISQEIIVTEEDCGTSKGFNVHSIVETKHDNIIVPLKD
RLVGRYIFETIRDHTGKIIVETNDLVTIDIADEIIKAGVEEVNIRTVLTCDTNRGVCQKC
YGINLATGDPVSIGEPVGVVAAQSIGEPGTQLTMRTFHTGGVAGGADITQGLPRIKELLD
VTTPKGSIAIISQIDGVVKEAKEEDGILSITVTSDQDERKYKSQYGAITRVKEGDEVTRG
QKLTEGAINIKELLEVARIEDVQNYILKEVQKVYRLQGIEISDKYIEIIVKQMLNKVKII
DSGDTPLLPGEIISSRNYRTEVLKAIEAGQKPPLAKHVIFGIKKAPLESDSWLSSASFQD
TARVLVKAVIKGKVDKLEGLKENIMLGNLIPAGTGLTGSADIIQRGKDTYDSEY
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgggaaacccaaataaaagaatgataaaaatagagcttgcttctcctgatgtgattaga
tcttgatcacgtggtgaagtaacaaaaccagaaacaataaattataagacactgaaaacc
gaaaaagaaggtctatttgatgaaagaatctttggaccaactaaaaactacgaatgtagt
tgcggtaaatataaaaaagttaaaaataagggaaaagtttgtgaacgttgtggagttgaa
attactgagtcaatagtaagacgtgaacgaatgggacatatcgaattagaagaaccagtt
acacatatatgaatgcttaaagtagctccttcaagaatcgcttcaattttagatttaaaa
acaaaagaagttgaagaagtagtatactttgtaagtcatattgttcttgatcctggtaac
tcacgtcacctaaaaagaggacaagtactagatcttggtaatgcaaaagcaagtttaaaa
actagagagaagctcttgaaaacattggaagacatcaaggtaaaccttgaaccagaatca
ttacaatgaaaaagagcggaaatcttaatacaacaacttaaatctccgcaaacaccattc
tcaatggatgaggcagcttcattcatttcaagaaatattcaagctaagtttggtattgga
gcaagtgcaattgaagaacttctaagtaatatagatctttctaaagaaatagctaagatt
aaagaagatttaaaagaacgtaaaggttcaaccgaacaaaataaacttatgaaacgtctt
gaagttttagattcactacaaaaatcacaatcaagacctgagtgaatgatattacatgta
atacctgtaatcccaccagatattagaccaataatccaattagatggaggaaggtttaca
acatctgaaataaacgacttatacagaagaataataatcagaaatgaacgtcttaaaaaa
gttaaaacaatgggtgcaccaagtataattgttaataatgaaaaacgtatgctacaagaa
gctgttgatgcattattagataacgaacgtaagccaagacctgtaaccggaaaagacaaa
cgtgctttaaaatctttaacatcaattcttaaaggtaaacaaggacgtttccgtcaaaac
cttttaggaaaacgtgttgactactcagggagatcagttattgctattggtccagattta
aaaatgtatcaagcaggaattcctcgtgatatggctatcacattgttcaagccatttgtt
ataagaagactacaagaaaatgagttagctgagaatgtaaaagtagcggaaaaaatgatc
gctgcaaatgattctaaagtttgagacgtacttgaggaagttataaaagatagaccagta
ttgttaaaccgtgcaccgactcttcaccgtttaggtattcaagcatttgaacctaaacta
gtaaaagggaaagctattcgtttacaccctctagtaacaactgcatttaacgccgacttt
gatggtgaccaaatggcagtccatttaccaattagtgatgaagcggttgctgaggcaaga
gctcttatgcttggaagtaaggcaattttgggtcctaaagacggaaaaccaattgtaact
ccaacacaagatatgattcttggaaactattacattacaactgaagaaaaaagtaatgaa
acaaatcaagtaaaaggagaagcaactatattctcttcttgcgaagaagttcatatagca
tacgaaactgatacagtctctctaaatgctatcgttgcaataccagttagtgaacttaaa
aataaaatgtttagtcaagaagaccaagacaaatatctaataaccacagtcggaaaaatt
attttcaatcaaatgttcaatgaagaattcccttgaattgttaataacaatatattgaat
gctgaagaagaaattaaaaaattcttattaccttccgatattgatttacgtaaatatatt
caagaagaatatgtaatacaacaaccaatcaagaaaaaagaactctcattaattattgaa
agatactttaaagcatatggagcacaaaaaactgcacaaatgttagataatatgaaggac
ttaggattcaaatactcttctaagtctggaactacaattagtgcagccgatgttgttgct
tatactgaaaagtttgaagatttcaaaattgcggatgaaaaagttgcacaaattacagag
ttttacaaccttggtatgttaactaagaccgagaaaaaacgtcgtgtcataaatgtatga
tcacaagtaaaagataaaattcaaacaaaactagaagatgttcttaaaaaggatacaaaa
aacccaatctttgtgatggctgattctggtgcccgtggtaatgtttctaacttcacacaa
cttgtaggtatgaggggacttatgaatgaccctaagggtgatattaaagaaattccgatt
aaatcttcttttagagaaggtctaaccgtttctgaatactttatttcaacccacggtgcg
agaaaaggtatggccgatgtggctcttaaaacagctgactctggttatttaacaagaaga
cttgtagacatatcacaagaaatcattgtaaccgaagaggactgtggtacaagcaaagga
tttaatgttcattcaattgttgaaacaaaacatgataacataattgttcctttgaaagac
cgacttgttggtagatatattttcgaaacaattagagatcatactggtaaaatcattgtt
gaaacaaatgatttagtaacaattgacatagctgacgaaataattaaggccggtgttgag
gaagtaaacattaggactgtcttgacttgtgataccaatagaggtgtttgtcaaaagtgt
tacggtatcaacttagcaactggtgatcctgtttcaattggtgaaccagttggtgtagtt
gccgctcaatcaattggtgaacccggaacacaacttacaatgcgtacattccatactggt
ggtgttgctggtggagccgatattacccaagggctaccacgtattaaagagttactcgat
gttacaacaccaaaaggttcaattgcaatcatatctcaaatagatggtgtggttaaagaa
gcgaaagaagaagatggaatattgtctataacagttacttcagaccaagatgagagaaaa
tataaatctcaatatggtgcaattacgcgtgttaaagaaggtgacgaagttacaagggga
caaaaacttaccgaaggtgcaataaatattaaagaattgcttgaggtagctagaattgaa
gatgttcaaaattacatattaaaagaagttcaaaaagtttaccgtttacaaggtattgaa
atttctgataaatatatagaaataattgttaaacaaatgttaaacaaagtaaaaataatt
gattctggagatactccacttcttccaggagaaattatatcttcacgaaattatcgaaca
gaggttttaaaagctattgaagctggacaaaaacctccattagcaaaacacgtaatattt
ggaattaaaaaagcaccacttgagtctgattcttgattatcaagtgcgtcattccaagat
acagcccgtgttcttgttaaagcagttatcaagggtaaagttgataaacttgagggttta
aaagaaaacattatgttaggaaacttaatccctgctggaactggattaacaggatcagct
gatattattcaaagaggtaaagacacttacgactcagaatattaa
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