Spiroplasma apis: SAPIS_v1c05400
Help
Entry
SAPIS_v1c05400 CDS
T02945
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
sapi
Spiroplasma apis
Pathway
sapi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sapi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SAPIS_v1c05400 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sapi03400
]
SAPIS_v1c05400 (recD)
Enzymes [BR:
sapi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SAPIS_v1c05400 (recD)
DNA repair and recombination proteins [BR:
sapi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SAPIS_v1c05400 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
SH3_13
Viral_helicase1
UvrD_C_2
AAA_11
HHH_RecD2
AAA_12
SLFN-g3_helicase
OB_YrrC
PIF1
nSTAND3
ATPase
UvrD-helicase
AAA_28
NTPase_1
AAA_18
AAA_22
T2SSE
AAA_17
AAA_5
AAA
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AHB36385
UniProt:
V5RKP4
LinkDB
All DBs
Position
652931..655129
Genome browser
AA seq
732 aa
AA seq
DB search
MQTLKGKVKKFIYNSDNFGVAIFNLIDNEKKSIVITGPITIMKLGIIYEIEGELLINNKL
NKTSFVVETVKQVKELTSDLIIHYLSSSLFPTIGKTLAKNIFDFFKDDVFKKILDNPNDL
MLVKGMTKEKSQIIQDVVKKNFNENPILDTFLNNNLKIEFYNRLQMDFENKEEMSWVLKN
DFYKYANNSGLSPFEEVDKVALAFGEPYDSEKRISWWANMLTTNILFKTGDTYTDLITLR
KELIKHFPHIDNIDSKLLYAKQEKILYFQNKKVYTKESFEDEEYIAKILNETNEVYPSDK
CNKSFDEILTEVEEHISNTLNIEGFKYNEEQVEALESFYTSNLIIITGGPGTGKTTVIMG
LVKMYEIMFNLESYAIAAPTGRAAGRIKEASGYSATTIHKLLKYSGNDKFDLDEKNPTFK
DLVILDECSMIDNHLFACLLKGVLIEKKLVLVGDVDQLPSVNYGNLFQDLIESNKFKIIT
LTKNNRQTNHEGKENKIIKLANSIKESTIRNFDFVDSDNLHFIFNENNDALLSEIKKIYS
EYRPLILEDELTDIQIVAPMYKNNLGIINLNEEIQELVNPARLHENVYKRGAYEYRKNDK
VMYIENDPKLELSNGDIGFIEKLTFDNKKLEYGYINFNARSKFFKPEGFSKINLNYACSI
HKTQGSEYNTVILVLDDTNKSTNFFTNKKMIYTAITRAKKNLFILSNKELFLRACSREMN
HRKSTLKEKIIN
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacacttaaaggcaaagtaaaaaaatttatatataatagcgataattttggtgtt
gccatttttaacttgatagataatgaaaagaaatctattgttatcacaggtcctattaca
attatgaaactaggtataatatacgaaatcgaaggagaacttcttataaacaacaaattg
aataagacaagttttgttgttgaaacagttaaacaggttaaagaacttacaagtgattta
atcatacattatttaagttcatctttattcccaactattggtaaaactcttgccaaaaat
atttttgatttctttaaagacgatgtattcaaaaaaattcttgataacccaaatgatctt
atgttagtaaaagggatgactaaagaaaaatcacaaataattcaagatgtagttaaaaaa
aatttcaatgagaacccaattttagatacttttttaaacaataatttgaaaattgaattc
tataacagattgcaaatggattttgagaacaaagaagagatgtcatgagtcttaaaaaat
gatttttacaaatatgcaaataacagcggattgagtccatttgaagaggtagacaaagta
gctttggcattcggtgaaccttacgatagtgaaaaaagaatatcttgatgagctaatatg
ttgacaaccaatatactttttaaaacaggagatacttatactgatttaataacacttaga
aaagaacttattaagcattttcctcatattgataatattgactctaaattattgtatgca
aaacaagaaaaaatattatactttcaaaataaaaaggtgtatacaaaagaaagctttgaa
gatgaagaatacatagcaaaaattcttaatgaaacaaacgaagtatatccatctgataaa
tgtaataaaagttttgatgaaatattgaccgaagttgaagaacatatctcaaatacatta
aatattgaaggatttaaatataatgaggaacaagttgaagcattagaaagtttctatact
tccaacctaattataattacaggtgggccaggtactggtaaaacaactgtgattatgggt
ttagttaaaatgtatgaaatcatgtttaatctagaaagttatgcgatagctgctccaaca
ggaagagctgctggtagaattaaagaagcatcaggctattcagctactacaatccataaa
ctattgaagtactctggtaacgataaatttgatttagatgaaaaaaatcctacattcaag
gaccttgtaattcttgatgaatgttcaatgattgataatcatttgttcgcttgtctatta
aaaggtgtattgatagaaaaaaaactagtacttgttggtgatgttgaccaacttccaagt
gtaaattacggtaacctttttcaagatttaattgaaagtaataagttcaaaattatcact
ttgacaaaaaataatcgtcaaacaaatcatgaaggtaaagaaaataaaataataaaattg
gcaaactcaatcaaagaatcaactataagaaactttgattttgttgattctgataatcta
cattttatttttaatgaaaataatgatgctcttttaagtgaaattaaaaaaatttattca
gaatatagaccacttatattggaagatgagttaacagacattcaaattgtggcaccaatg
tacaaaaataacttggggatcattaatttgaatgaagaaattcaagaactcgtaaatcca
gctcgtctacacgagaatgtttataaacgtggtgcatatgaatatagaaaaaatgataaa
gtaatgtatattgaaaacgaccctaaattagagctatcaaatggagatataggttttata
gaaaaattaactttcgataataaaaaactagaatatggttacataaatttcaatgctaga
tcaaaattctttaaacctgagggtttttctaaaatcaatttaaattatgcttgtagtatt
cataagactcaagggagtgaatataatacagtaattttagtattagatgacacaaacaag
tctactaacttctttacaaataaaaaaatgatttacactgccataactagagccaagaaa
aatttatttatcctatcaaataaagagttatttttgagagcttgttcaagagaaatgaat
caccgaaaatcaactttaaaagagaaaattataaattaa
DBGET
integrated database retrieval system
