Salimicrobium sp. PL1-032A: U0355_03050
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Entry
U0355_03050 CDS
T10562
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sapl Salimicrobium sp. PL1-032A
Pathway
sapl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sapl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0355_03050 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sapl03021
]
U0355_03050 (rho)
03019 Messenger RNA biogenesis [BR:
sapl03019
]
U0355_03050 (rho)
Transcription machinery [BR:
sapl03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
U0355_03050 (rho)
Messenger RNA biogenesis [BR:
sapl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
U0355_03050 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
OB_RNB
S1CSD-TOTE-2
ATPase_2
Spore_III_AA
AAA_24
AAA_14
NACHT
AAA_25
ResIII
AAA
Motif
Other DBs
NCBI-ProteinID:
WVR02252
LinkDB
All DBs
Position
594867..596147
Genome browser
AA seq
426 aa
AA seq
DB search
MAELNISSLETLKLKDLYDKAREYKVSYYSKLTKRELIFAILKAQAEKDGYLFMDGVLEI
IPSEGFGFLRPINYSPSAEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVDA
VNGEDPDSAKERVHFPALTPLYPERHMKLETAQNQLATRVMDVMAPVGYGQRGLIVAPPK
AGKTMLLKQMANSISKNHPDSKLIILLVDERPEEVTDIERSVASDVDVISSTFDEVPENH
VKVAELVLERAMRLVEHKRDVIVLMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKR
FFGAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAID
LKRSGTRKEELLLSKEQLDKMWAIRQAMSGSQDFYERFLRRMKKSKDNREFFELMDKEMN
QNAGNR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaattgaatatttccagcttagaaacgttgaaattgaaagatttgtacgacaaa
gcccgcgaatataaagtatcctattattcgaaactcacgaagcgcgaactgattttcgcc
attctgaaagcacaggcggaaaaagatggatacctgttcatggacggagttctcgaaatc
attccatcggaagggttcggattcctgcgtccgatcaattattctccgagtgccgaggat
atttatatctccgcttcccagatccgccgcttcgatctcaggaacggggataaagtgtcg
gggaaagtacgtcccccgaaagagaacgaacggtattacggattgcttcacgtcgatgcg
gtgaacggggaagacccggattctgcgaaagaacgtgtgcatttcccggcgctcaccccg
ctttacccggagcgtcatatgaagcttgaaaccgcacagaatcagctggccacaagagtg
atggacgtgatggcaccggtcggatacggccagcgcggtctgatcgtcgctccgccgaaa
gccggcaaaacgatgcttcttaaacagatggcgaacagtatttcgaagaatcatcccgat
tcgaaactgatcattctcctcgtcgatgaacgaccggaggaagtgacggatatcgaacgc
tctgtcgcatcggatgtggacgtcatctcctctaccttcgatgaagttccggagaatcac
gtcaaagtggcagaactcgtgcttgagcgcgcgatgcgcctggtcgagcataagcgggat
gtcatcgtactgatggatagtattacgcgactggcgagagcctataaccttgtcattccg
ccgagcggacgtacgctatccggtggtatcgaccctgctgccttccaccgtccgaaacgg
ttcttcggggcggcgcgtaacatcgaagaaggcggcagcctgaccatcctggcgacagct
ctcgtcgataccgggtcccgcatggatgatgtcatctatgaagaattcaaaggtaccggt
aacatggaactgcacctggatcgttctctcgctgaacggcgcatcttcccggcgatcgat
ctgaaacgctccggcaccagaaaagaagaactgctcctgtcgaaagaacagctcgacaaa
atgtgggcgatccgccaggcgatgtccgggtcccaggacttctatgaacgcttcctgcgc
cgcatgaagaagtcgaaagacaaccgggaattcttcgaactgatggacaaagagatgaac
cagaacgcagggaatcgctga
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