Salimicrobium sp. PL1-032A: U0355_06860
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Entry
U0355_06860 CDS
T10562
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sapl Salimicrobium sp. PL1-032A
Pathway
sapl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sapl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0355_06860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sapl03019
]
U0355_06860
03400 DNA repair and recombination proteins [BR:
sapl03400
]
U0355_06860
Enzymes [BR:
sapl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U0355_06860
Messenger RNA biogenesis [BR:
sapl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U0355_06860
DNA repair and recombination proteins [BR:
sapl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
U0355_06860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Helicase_C_2
DEAD_2
Motif
Other DBs
NCBI-ProteinID:
WVR00506
LinkDB
All DBs
Position
1353793..1355295
Genome browser
AA seq
500 aa
AA seq
DB search
MKSPADLEATLEEYFGFSTFREGQKEVIMNVLDDKDSLAILPTGSGKSLCYQFPSLVKSG
LTIVVSPLISLMIDQVKQMKSRGMKRVAALHSFLTTEERRRIFQHLNKYDLLYISPEMLL
MPRMREALKNVSVSLFVVDEAHCISQWGHEFRTDYLKLGLVMKELEDPPLLAVSATATPQ
VQEDILFQLGRSQAEKIIYPMDKPNIQLSMSKVESEAEKLAFLKRYLQKQQAPTMIYFSS
RQTAEKVCYELKRDSLGKIGFYHGGMEAVDRQLVQQQFMKNELDIICCTSAFGMGIDKPD
IRLVIHYHLPPRIESFIQEIGRAGRDGGECTSLLLYAPGDERLPRMFIDSELPTDEQIEG
FVFKTEALESTPSLEACVTLELSESQYNFMRYQVETANINGINDVSKLKRSMKQMKRKRE
KKKLTHLERMLEVLHTTGCRRKELYRHFQSFVQPARYICCDRCDASVFEVTYQLQRKRTV
AAPWQERLRALLVPDGSYEK
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgaagagtcccgcagatttagaagccaccttagaagaatatttcggtttcagcaccttc
agagaaggtcagaaagaggtcattatgaatgtattggacgataaagattctttggccatc
ctcccgaccggcagtgggaagtctctctgttaccagttcccttctttagtcaaatcaggg
ctcaccatcgtggtttctccgctcatctcattaatgatcgatcaggtcaaacagatgaag
tcacgggggatgaagcgtgtagcagctcttcacagtttccttactacggaagaacggcga
aggatctttcaacacctgaataagtatgatctgctgtatatctcacctgaaatgcttctc
atgccaaggatgagagaggctcttaaaaacgttagcgtttcgttgttcgtcgtcgatgaa
gcgcattgtatatctcaatgggggcatgaattcaggacggattacctgaagctcggtctg
gtgatgaaggaacttgaagacccacctctcctggcagtgagtgcgacagcgacgccccaa
gtgcaggaagacatattgtttcaattggggcgatcacaagccgaaaaaatcatctaccct
atggataagccgaatattcagttgagtatgtcgaaggtcgagagtgaagcggagaagctt
gcttttctaaagaggtacttgcaaaagcaacaagctccgacaatgatctacttctccagt
cggcagacagcggagaaagtctgttatgaattgaaaagagattctctcggaaaaatagga
ttttaccacggaggaatggaagcggtggatcgccagcttgtacagcaacagttcatgaag
aatgaacttgatatcatttgttgtacgagcgctttcggcatgggaatcgacaagcccgat
atcaggcttgtcatccattatcacctgccgccaagaatcgaatccttcatacaggaaatc
ggcagagccggaagagacgggggagaatgcacgagtcttctattatacgctcctggagat
gaaaggctcccgagaatgttcatcgactctgaacttccgacggatgaacagatagaaggg
ttcgtttttaaaacggaagctcttgaaagtactccttccctggaagcatgtgtgacactt
gaattatcggagtcgcagtataatttcatgcgctaccaggtagaaacggctaatatcaat
ggaataaacgacgtttcaaaattgaaaagatcgatgaaacagatgaaaaggaaaagggag
aaaaagaaattgacgcatcttgaacgaatgcttgaggtgcttcatacaacgggatgtcga
agaaaggaattgtatcggcactttcaatcatttgttcagccagcccgctatatctgctgt
gaccggtgtgatgcatcggtttttgaagtgacctatcagctgcagcgtaaaagaacggtt
gcagcaccctggcaggaacgactgcgtgcacttctggttccggacggttcctatgaaaaa
tag
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