Salimicrobium sp. PL1-032A: U0355_10090
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Entry
U0355_10090 CDS
T10562
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sapl Salimicrobium sp. PL1-032A
Brite
KEGG Orthology (KO) [BR:
sapl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sapl03009
]
U0355_10090 (rlmD)
Enzymes [BR:
sapl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
U0355_10090 (rlmD)
Ribosome biogenesis [BR:
sapl03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
U0355_10090 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Cons_hypoth95
MTS
Methyltransf_15
Methyltransf_25
TRM5-TYW2_MTfase
N6_N4_Mtase
PrmA
Methyltransf_4
UPF0020
Methyltr_RsmB-F
Methyltransf_11
RrnaAD
PCMT
Motif
Other DBs
NCBI-ProteinID:
WVR01097
LinkDB
All DBs
Position
complement(1944393..1945799)
Genome browser
AA seq
468 aa
AA seq
DB search
MAKGNKKNQKKSHNQQKSYGKQKPPKANQPKTAEMTCTGLTDDGKGIAEWKGKRLEIPHL
LPGEKAEVAVPKRGPAKVVKVIEAVDYRRKAPCPYFYECGGCQIQHMTEKAQGDFKQGIV
DRLMKPFGKPEPIMTMEHPYDYRNKNTMTFGEAGKREIIGGLYKQNSHDLIQVDRCLIHD
PKADDIIGTIKKLLPSFKLRPYDEDSGRGFLRHVLVKTGKTSGQIMVVLVTGTPEFKGKN
NFVKALRREHPEISTIIQNINTRNDSMVLGNQEKVLFGKGFITDTLGGLEFEISARSFYQ
INPVQTEKLYGKAVELAGLTGKETVVDAYCGIGTIGLIASKQAGNVIGVEMNKGAVKDAI
RNSKHNNVKNARFYQGDAGEFMVNMAAEKKKADVVILDPPRSGSDEAFLSSVVTLSPERV
VYVSCNPETQVRDLHYLTKKGYKVKEIHPVDMFPQTYHVETVVLLEKK
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaggaaataagaagaatcagaagaaatcccacaaccaacagaaatcttacggt
aaacagaaacctccaaaggcgaatcagccaaagaccgcggaaatgacttgtacggggctg
accgatgacgggaaagggatcgctgaatggaaagggaaacggctggagatccctcatctc
ctgccgggagaaaaggcggaagtagcggtacctaagcgtggaccggcgaaagtcgtgaag
gtgatagaagcggttgattaccgccggaaagctccgtgcccatacttttatgaatgcgga
ggctgtcagatccagcacatgacggaaaaagcgcaaggagacttcaaacagggaatcgtc
gaccgtctcatgaaaccgttcggcaagccggagccgatcatgacgatggagcacccttat
gattatcggaacaaaaacacgatgaccttcggcgaagcaggtaaacgtgaaatcatcggc
gggctgtataagcagaattcgcacgatctcatccaggttgatcgttgtctaatccatgat
ccgaaagcggatgacatcatcggaacgatcaagaaactgttaccttctttcaaactgaga
ccttatgatgaagactcaggtcgagggtttctccggcatgtactcgtcaaaaccggaaag
acgagtggacaaatcatggtggtgctcgtaacagggacgcctgaattcaaaggtaagaat
aatttcgtcaaagctttgcgccgggagcacccggagatttccacgatcattcagaatatc
aatacgcgtaacgatagcatggtgctgggcaatcaggagaaagtcttgtttggcaaaggg
ttcatcaccgatacactcggaggcctcgagttcgagatctcggcaaggtccttctatcag
atcaatccggtgcagaccgagaaactgtacgggaaagcggtggaacttgcaggattgacg
ggtaaagaaacggtggttgatgcgtattgtggcatcggaacaatcggactgattgcaagt
aaacaggcaggtaatgtgatcggggtggagatgaacaagggtgccgtgaaagatgctata
cggaactcgaagcacaacaatgtgaagaatgcgaggttctatcagggagatgccggagaa
ttcatggtgaatatggctgccgagaaaaagaaagcggacgtcgtcatattagacccgccg
cgaagcgggagtgatgaagcgtttctttcaagtgtcgtcaccctgtctccggagcgtgtc
gtgtatgtatcctgtaatccggaaacgcaggtccgtgatctgcattatctgaccaaaaag
gggtataaagtgaaagagattcatccggtcgatatgttcccgcagacataccatgtagag
actgtcgtgttgttggagaagaaataa
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