Salimicrobium sp. PL1-032A: U0355_12385
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Entry
U0355_12385 CDS
T10562
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sapl Salimicrobium sp. PL1-032A
Brite
KEGG Orthology (KO) [BR:
sapl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sapl03009
]
U0355_12385 (rlmD)
Enzymes [BR:
sapl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
U0355_12385 (rlmD)
Ribosome biogenesis [BR:
sapl03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
U0355_12385 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_15
PrmA
MTS
Cons_hypoth95
Methyltransf_11
RrnaAD
UPF0020
N6_N4_Mtase
Methyltransf_23
PCMT
Methyltransf_12
TRM
Ubie_methyltran
TPMT
Motif
Other DBs
NCBI-ProteinID:
WVR01490
LinkDB
All DBs
Position
complement(2395548..2396924)
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AA seq
458 aa
AA seq
DB search
MPKPQPPVQKNETVTLTFEDLTHEGNGVGKVDGYPLFVPYGLPGEKARVKVIKVKKNFGF
GKLIEVEKESEDRVTPPCDVYYQCGGCQLQHMSYSRQLAMKKGQVENVMKKIGHLEHVPV
HDPIGMNDPWRYRNKIQIPVGEKENGELKTGFYQKRSHNIIDMDTCLIQDEPNDRMVEAV
RRIATELGIDAYHEESHRGVLRHIMVRTGQQTGDIMVVLVTRTKKLPYQDKLIERITEAY
PNVKSIVHNVNKDKTNVILGKETNVIYGDQYIYDTIGDIKFMISAKSFYQVNPTQTKALY
DKALEYAELRGGETVIDAYCGIGTISLFLAEAAKKVYGVEIVPDAVNDAKKNARLNNIDN
AEFYVGEAEKIMPWWRKQGLRPDVIVVDPPRKGCDEALLTSMLEMEPERIVYVSCNPSTL
ARDLRILEDGGYETQEVQPVDQFPQTNHVECVSWLEKK
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaaccacaaccgcccgtacagaaaaacgaaaccgtcacgcttacgttcgaagac
ctgacccacgaagggaacggcgtagggaaagtggatggctacccgctattcgtcccgtac
ggactcccgggcgagaaagcccgggtgaaagtcatcaaagtgaagaagaacttcggcttc
gggaaacttatcgaagtggagaaggagagcgaagaccgtgtaacaccaccgtgtgacgtc
tactaccagtgcggtggatgccagcttcagcatatgagctacagccgccagcttgcgatg
aagaagggccaggtcgagaacgtcatgaagaaaatcggccacctggaacacgtacctgtc
catgatccgatcggcatgaacgacccgtggagataccgcaacaaaatccagatcccggtc
ggggagaaagaaaacggagaactgaagacaggcttctaccagaaacgcagccacaacatc
atcgacatggacacgtgcctcatccaggacgaaccgaatgaccggatggtggaagcggtg
cgccgtattgcgacggagcttggcatcgatgcctatcacgaagaatcccaccgcggcgta
ctgcgtcacatcatggtccggaccggccagcagacgggagacatcatggtcgtactcgtc
acccgtacgaaaaagcttccgtatcaggacaagctgatcgaacggatcacggaagcctat
ccgaacgtgaaatccatcgtccacaacgtgaacaaggacaagacgaacgtcatcctcgga
aaagaaacgaacgtcatctacggcgatcagtatatttacgacaccatcggcgatatcaaa
ttcatgatctcagccaaatcgttctaccaggtcaacccgacacagacgaaagcgctgtat
gacaaagccctggagtacgcggagctgcgcggaggagaaacggtcatcgatgcgtactgc
ggcatcggaaccatctcgctattcttggcagaagcggcgaaaaaagtatatggcgtggag
atcgtgccggatgctgtgaacgacgcgaagaaaaacgcccgtctgaataacatcgacaac
gcagagttttatgtaggagaagcggaaaaaatcatgccatggtggcgcaagcaggggctt
cgcccagacgtgattgtcgtggatccaccaagaaaaggctgtgacgaggcactgcttacg
tcgatgcttgagatggaaccggagcggatcgtctacgtttcctgtaatccatccactctc
gcccgtgatcttaggattcttgaggatggaggatatgaaacacaggaggttcagccagtg
gatcagtttccacagacgaaccatgtggagtgtgttagttggttagagaaaaaataa
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