Salimicrobium sp. PL1-032A: U0355_13350
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Entry
U0355_13350 CDS
T10562
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sapl Salimicrobium sp. PL1-032A
Pathway
sapl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sapl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0355_13350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sapl03019
]
U0355_13350
03009 Ribosome biogenesis [BR:
sapl03009
]
U0355_13350
Enzymes [BR:
sapl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
U0355_13350
Messenger RNA biogenesis [BR:
sapl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U0355_13350
Ribosome biogenesis [BR:
sapl03009
]
Prokaryotic type
rRNA helicases
U0355_13350
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
DeaD_dimer
BT_3535-like
SUa-2TM
Cas3-like_C_2
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WVR01644
LinkDB
All DBs
Position
complement(2592919..2594385)
Genome browser
AA seq
488 aa
AA seq
DB search
MTKFNSLGLSDPILKALDHMGFEETTPIQAETIPLGIEGKDVIGQAQTGTGKTAAFGIPM
IEKVDKQVRGVQGLVVAPTRELAIQVAEELNRLGKNAGVRALPIYGGSNMERQIRALKNN
EIVVATPGRLLDHIRRKTIKLQQVHTAVLDEADEMLNMGFIDDIRDILKALPEERQTLLF
SATMPKEIRDIATTLMNSPEEVKVKAKEMTVSNIEQYYVEIAEKHKFDALTRLLDIHAPD
LAIIFGRTKRRVDEVADALQVRGFRAEGIHGDLTQGKRMSVLKKFKQGQIEILVATDVAA
RGLDISDVTHVYNFDIPQDPESYVHRIGRTGRAGRKGESISFVTPREKDQLHLIEKLTKK
KVEKLRVPSYKEAIKGQQDIAVSKLVEKMNDEDINDYKQAASDLMDQYEGQDLVAAALKM
LTKERKEVPVRLSSVQPISTKNAKRDKFSGKKRGGGGGRNYKGNSKKRPYNNNKNNSNRN
FNQNNKGK
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
gtgactaaatttaactcattaggtttatcagatccgattttgaaagctttagatcatatg
ggatttgaagaaacgacacccattcaggcagaaaccattcctcttggaatagagggtaag
gatgttatcggccaggcacagacaggtactggtaaaacagcagctttcggaatccctatg
atcgaaaaagtagacaagcaggtacgcggcgtacagggccttgtagttgccccgacccgt
gaacttgcgattcaagtggcggaagagttgaaccgactaggtaaaaacgcaggagtccgt
gcacttccaatctatggcggttccaacatggaacgtcagatccgtgcgcttaagaacaac
gaaatcgttgtcgcgacaccgggacgtctcctcgaccatatccggagaaagaccatcaaa
ttgcagcaggttcataccgctgtacttgatgaagcggacgaaatgctcaacatgggcttc
atcgacgatatccgtgatattctgaaggctcttccggaagaacgtcagacgcttctcttc
tctgcaacgatgccgaaagagatccgtgacatcgcaacgacactcatgaacagcccggaa
gaagtgaaagtgaaagcgaaggaaatgacggtatcgaatatcgagcaatattatgtagag
attgctgagaaacataagtttgacgcgttgactcgtcttcttgatattcatgcaccggac
ctcgcgatcatcttcggacgtacaaagcgtcgtgtggacgaagtggcagatgcccttcag
gtacgcgggttccgtgcagaaggtatccacggagaccttacgcaaggtaaacgtatgtcc
gtcttgaagaaattcaaacagggacaaatcgaaatccttgttgcgacagacgtcgcggct
cgtggtcttgatatctctgacgtgacgcacgtatataacttcgatatccctcaggatcct
gaaagttatgtacaccgtatcggccgtaccggtcgtgccggacgtaaaggggaatccatc
tccttcgtgacaccgcgtgagaaagaccagctgcacctgatcgagaagcttacgaagaaa
aaggtcgaaaagcttcgcgtcccttcttacaaggaagcgatcaaaggccagcaggatatc
gctgtgtccaagctcgtcgagaagatgaacgatgaggacatcaacgattacaagcaggcg
gcgagcgatcttatggatcagtacgaaggccaggacctcgtagcggcagctcttaagatg
ctgacgaaagaacggaaagaagtaccggttcgcctttcttccgtgcagccgatcagcacg
aagaacgcaaaacgcgataagttcagtggtaagaaacgtggcggaggcggaggccgtaac
tataaaggcaactccaagaaacgtccttacaacaacaataagaacaacagcaaccgcaac
ttcaatcagaataacaagggtaaataa
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