Scedosporium apiospermum: SAPIO_CDS0897
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Entry
SAPIO_CDS0897 CDS
T06367
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sapo
Scedosporium apiospermum
Pathway
sapo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sapo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAPIO_CDS0897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sapo03019
]
SAPIO_CDS0897
03041 Spliceosome [BR:
sapo03041
]
SAPIO_CDS0897
03009 Ribosome biogenesis [BR:
sapo03009
]
SAPIO_CDS0897
03016 Transfer RNA biogenesis [BR:
sapo03016
]
SAPIO_CDS0897
Enzymes [BR:
sapo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SAPIO_CDS0897
Messenger RNA biogenesis [BR:
sapo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
SAPIO_CDS0897
Spliceosome [BR:
sapo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
SAPIO_CDS0897
Complex C
U4/U6.U5 tri-SnRNP related factors
SAPIO_CDS0897
Ribosome biogenesis [BR:
sapo03009
]
Eukaryotic type
Pre-60S particles
Helicases
SAPIO_CDS0897
Transfer RNA biogenesis [BR:
sapo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
SAPIO_CDS0897
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
ResIII
DEXQc_Suv3
DUF7223
AAA_22
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
27719049
NCBI-ProteinID:
XP_016645851
UniProt:
A0A084GFE0
LinkDB
All DBs
Position
Unknown
AA seq
1823 aa
AA seq
DB search
MTRFSSLLAACLVAPLALASPFVSHQDGKAGGSGAQIVRNVPEPVVHRDGRLVSREPGAP
MVRRNGLVARTDTRSVSLEQTLENEPLFNSSDITLFTGPSIEVVCTRCCSKGSVEATFPS
DLNDIVNPKFRIDLVGVEALVELDVVVSAQSNFQVPLLKLPPGLANIELPGFKAGLFIDL
VLLFELSAEVDLSGGFYLKIPDGSFFEIDITAEGLHSEDFTGVVSKPLPITINKNNTQVD
IKVDLQLKASLGIGGGTDQGVSVPGLGEVGIPFVDLPNIGAGAEVGAFINIVEFIGNVAP
TNSCALEAVPEINVNIGTFAQVGVSFLDNFVGLEPSATTTLFVLPLPTACIVPLGQPVPI
RSLPLATERQCVATPAASNVLPIGSGSSRTLTAGEPVTTIHITRTSTLQRTIHTYEAETP
KLVGRTLGAEGVITQLTAVACATAAVVCPIELRTTVTYEATVCPPAATQARGCFAGITDA
STFVPTSVVNAVTREQQQQPTGTTVTDVSETVASETVDPTAVITTAVPPPLGLSTITRGL
DGQQSVEAPAPPLGLSTLTVVPGVIPTPGNSAQASGTNAVLAPAVSSPVPPLGLSTITIV
PAAGNAAQVSGSSAVVPPPGSSPAPPPGSSTLSVIPSAIPAPESAAEFSGSRAVFAPDAS
APAPPVGFSTLTVVPGVVPVVENAAAAQVSDTAPAPPLGLSTITTLAGPVPSAGAQGAAA
QQSPVQVAGAPRMADLFDVFAADPQSDDESGSEEAPVAVAPPTDKRKKRRADGAIKNGSS
PQSTQSAPTKSSRDSAPASDEHDDKRRKKEDEKPVLTDTFETAASREVAAAESLVTTETE
EGSLVLSHNIQHQVALPPDLDYEYVPLSEHKPPAEPARTWNFKLDPFQSLAVASIERDES
VLVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTSPIKALSNQKYRDFDAIFGDVGLMTGDI
TINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEVHYLREKTRGVVWEETIILLPDK
VRYVFLSATIPNAFQFAEWIAKIHHQACHVVYTDFRPTPLQNYFFPAGHDGIYLVVDEKR
NFKEQNFNKAMALVEQKKKESEERPGGGGGGGKGKNKGRKGRNEVADSKSDISKVIKMII
RKKFDPVIVFSFSKRECESLALSISNICFNNDSEKKMVQRVFSNAVMSLAEADRDLPQIA
NLLPLLERGIGVHHSGLLPILKETIEILFQESLVKVLFATETFSIGLNMPAKTVVFTQVT
KWDGIKRRPLTPGEYVQMSGRAGRRGLDARGIVIMMIDESMEPEVAKEIVVGEQERLNSA
FYLGYNMVLNLLRIEAVSPEYMLERCFFQFQNAASVPALEKELMSLQLDRDGLMIPDEST
MKEYYNLRKQINSYTQDMRAVIQHPAHCWEFLQPGRLVRIYDPKFTGDEGDVLETRDFGW
GIVVNSMDRRRNKIGGNDDYPPQESKMIDVLMNVPADTDTNFVFPSGDLALPKGISPERP
GEKTRFERIPCLLTCIQSISQIRLFMPKNIDSPSERANLRKALSEVQRRFPDGVPILDPL
ENMDITDDSFKQLLRKIEVLESRLLANPLHGSPELPKLWELYRRKLKLTDKIKETKMSIA
KAHSIVQMEELKSRKRVLRRLGFINEAEVVQLKARVACEISSTEGHELLLSELLFERFFN
EMTPEMCASVLSCFVFDEKVNAPALREALAKPYAEIVAKARIIARVSQESKLDMDEEAYV
EKLKWQLMELVYAWAEGRPFAEICKMADVYEGSIIRHFRRLEELLRQMAQAGKVMGSEEL
TQKFEESLNKIRRDIVAAQSLYL
NT seq
5472 nt
NT seq
+upstream
nt +downstream
nt
atgacccggttcagttccctcctcgcggcatgccttgtggcgccgctggctcttgctagc
ccttttgtgtctcatcaagatggaaaggcgggtggttctggagcccagatagtccgaaac
gtacctgagcctgttgttcacagggacgggcgcctggtctcgagggaacctggtgcgcct
atggttaggcggaatggtcttgtggcgaggactgatacgagatctgtcagtcttgaacag
acacttgaaaatgagccattgttcaatagttccgacatcaccctctttaccggcccctca
attgaagtagtctgcacgaggtgctgctccaaaggaagtgtggaagcgaccttcccttcc
gacctcaacgacattgtcaaccccaaattccgaatcgatctcgtgggtgtcgaggccctc
gttgagctggacgtagttgtctccgctcaaagcaactttcaagttccgctacttaaactt
cctcctgggctcgccaacattgagctgcctggattcaaggctggtctcttcatcgatctc
gtcctcctctttgagctctctgccgaagttgatcttagtggtggattttatctcaagatt
cctgatggatctttctttgagattgatatcaccgctgaaggcctccactctgaagatttc
accggtgtcgtctcgaagcctctgccaatcaccatcaacaagaacaacacccaagtcgat
ataaaagtggatcttcaactcaaagcctctcttggaatcggtggaggaaccgaccaaggg
gtgtctgtccctggtctaggcgaagttggtatcccattcgtcgatctccccaacatcggc
gccggagccgaggtcggcgccttcatcaacatcgtcgagttcatcggcaacgtcgctccc
acgaactcttgcgctctggaggccgtccccgagatcaacgtcaacatcggcaccttcgcc
caggtcggcgtctccttcctggacaatttcgtgggtctcgaaccctccgccaccacgacc
cttttcgtgcttccgctgcctactgcgtgcatcgtgccgctcggccagccggtcccgatt
aggtctttgcctttggctacggaacgtcaatgcgtcgcgaccccggcggcttcaaatgtt
ctccccataggctccggttcgtcgaggaccttgactgccggcgagcccgtcaccacaatc
catattacgaggacatctactctccaacgtaccatccatacctacgaggccgagaccccc
aaactcgtgggtcgcaccctcggagccgaaggggttattacgcagcttacggctgtcgct
tgcgccacggctgccgtagtctgtcccatcgagctcaggacaaccgtcacctacgaagct
actgtctgcccgcctgccgctacgcaggcccgtggttgcttcgcgggcatcacggatgct
tcgacgtttgtgcctacttcggtggttaatgccgtcactagggagcagcagcagcagccc
actggcacgactgtgactgatgtcagcgagactgttgccagcgagaccgtcgatcctacc
gccgtcattacaaccgcggtccctccacctctcgggctctctactatcacgcgcgggctt
gacggtcagcagtctgtcgaagctccggccccgcctctcggtctttctactcttactgtt
gtccctggcgtcattcctactccgggaaattcggcgcaggctagtggaacaaatgccgta
cttgctccagctgtctctagtcctgtccctccgcttggtctctctaccatcaccattgtc
ccggcagcggggaatgcagctcaagtcagcgggtcaagcgcggtggttcctccgcctggt
tcttctcctgctcctccacctggctcctccaccctctctgtcatcccaagcgccattccc
gcgccggagagtgcggcggaatttagcggatcgagagcggtgtttgctcctgatgcctct
gctcctgcccctcctgttggtttctccaccctcacagttgtccctggcgtagtccccgtc
gtcgaaaatgcggctgcggctcaggttagtgacactgctcccgctccacctcttggcctc
tctactattacgacgcttgccggccccgtccccagtgcgggagcgcagggcgctgctgct
cagcagtcgccggttcaggtcgctggtgcgccgaggatggctgatctttttgacgttttc
gcggccgaccctcaatccgacgatgagtccggttccgaggaagcccccgttgcggtcgca
ccgcccacagacaagcgcaagaagcgtagggccgacggtgcgataaagaacggcagttcc
ccacagtcgacccaatccgcgccgacaaaatcatccagagatagtgctcccgcctcggac
gagcacgacgacaagcgacgcaagaaggaagatgagaagcccgtcctgacagatacattc
gagacggcagcatctcgcgaggtcgctgcggccgagtccttggtcacgaccgagaccgaa
gagggctccctcgttctttcccacaatatccagcatcaggttgccctaccgccggacctc
gactacgagtacgtgccgctatccgaacacaaacccccggccgagcccgcgaggacgtgg
aatttcaagctcgatcctttccagagtcttgcggtggcgtcaatcgagcgggatgagagc
gtgttggtttcggcgcatacgtcggctggaaagacggttgttgcggagtatgctattgcg
cagtgcttgaagcggaatcagcgagtcatctacacgagtccgatcaaggccctcagtaac
caaaagtatcgagattttgatgccatcttcggcgacgtaggcttgatgacgggtgatatc
acgattaaccctacggcttcgtgtctggtaatgacgacggagattttgcggtctatgttg
tacagaggttccgagattatgcgcgaggttgcctgggtcgttttcgatgaggtgcattat
cttcgcgagaagacgagaggtgtcgtgtgggaggagaccatcatcttgctccccgacaag
gtccgctacgtcttcctctccgccaccattcccaacgctttccaattcgccgagtggata
gccaagatccaccaccaggcctgtcacgtcgtatataccgacttccgacctacacccctg
caaaactacttcttccctgccggccatgacggaatatatctcgtcgtggacgaaaagagg
aatttcaaggagcaaaacttcaataaggccatggcgctggtcgagcagaagaagaaggag
agcgaagagcggcccggtggcggcggcggcggcggcaagggtaagaacaagggtaggaag
ggacgcaacgaggtggccgatagcaagtcagacatcagcaaggtcatcaagatgattatt
cgcaagaagttcgaccccgtcattgtcttcagcttcagcaagcgagaatgcgagagcctt
gccctctcgatatccaacatttgtttcaataacgactcggagaagaagatggtgcagcgc
gtcttctccaatgccgtcatgagcttggccgaggccgatcgcgatcttccgcagattgcc
aaccttctcccccttctggagcgaggcattggcgtgcatcactctggcttgcttcctatt
ttgaaggagaccattgaaattctcttccaggagtccctcgtcaaggttctcttcgcaact
gagacgttctctatcggtctaaacatgcctgccaagaccgtcgtgttcacgcaagtcaca
aagtgggatggtattaagagacgccctctcacccccggcgagtatgtccagatgtctggc
cgtgctggtcgtcgtggtcttgatgctcgaggtattgtgattatgatgattgatgagtct
atggagccggaggtcgccaaggagattgtcgtgggagaacaggagaggctaaactctgcc
ttctacctcggctacaacatggtgctgaaccttctgcgtatcgaggccgtttcgccagag
tacatgctggagcgttgtttcttccagttccagaacgctgctagtgtgcccgccctggag
aaggagctcatgtcgctgcagctcgaccgcgacggattgatgatccccgacgagtcgacc
atgaaagaatactacaacctgcgaaagcagatcaactcgtatacccaagacatgcgagcc
gtcatccagcatcccgcgcactgttgggaattcttacagcccggccgccttgtgcgcatt
tacgaccctaaatttacgggagacgagggtgacgttctcgagacgcgcgatttcggctgg
ggtattgttgtcaactccatggatcgtcgccgtaataagattggcggcaacgacgattac
ccgcctcaggagtccaagatgatagacgttcttatgaatgtgcccgccgatacggacacc
aactttgttttccccagcggcgacttggccctacctaaggggatcagccctgagcgtcct
ggagagaagacacggttcgagcgaattccctgcctcctcacctgcattcagtcgattagc
cagatccggcttttcatgcccaagaacatcgactcgcctagtgagcgagccaacctccgg
aaagcactcagcgaagtgcagcgaaggttccccgacggagtgccgatcctcgacccgctc
gagaacatggacatcaccgacgactccttcaagcagctcctccgcaagatcgaagttctc
gagtcccgtctcctagcgaaccccctccacggctcgcccgagctacccaagctctgggag
ctctaccgccgcaagctcaagctcacggacaagatcaaggagacgaagatgtccatcgcc
aaagcccacagcatcgtgcaaatggaagagctcaagtcccgcaagcgcgtcctccgccgc
ctcggcttcatcaatgaggccgaggtcgtgcagctcaaggcgcgcgtcgcctgcgagatc
tcgtcgaccgagggccacgagttgctcctctcggagctcctcttcgagcgcttcttcaac
gagatgacgcccgagatgtgcgcgtccgtgctcagctgcttcgtcttcgacgagaaggtc
aacgcaccggcgctcagggaggccctggcgaagccgtacgcggagattgtggccaaggcg
aggatcattgcgagggtgagccaggagagtaagcttgatatggacgaagaagcgtatgtg
gagaagctgaagtggcagttgatggagcttgtttatgcgtgggctgagggtcgtccgttt
gcggagatttgcaaaatggcggacgtctacgagggctccattatccgccatttccgccgc
ctcgaggaattgcttcgccaaatggcccaggccggcaaggtaatgggcagcgaggagctg
actcaaaagtttgaagagagtctgaacaagatcaggcgcgacattgtcgctgcccagagc
ttgtatctgtaa
DBGET
integrated database retrieval system
