Scedosporium apiospermum: SAPIO_CDS4854
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Entry
SAPIO_CDS4854 CDS
T06367
Name
(RefSeq) Pyruvate dehydrogenase (acetyl-transferring)
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
sapo
Scedosporium apiospermum
Pathway
sapo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sapo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAPIO_CDS4854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sapo03019
]
SAPIO_CDS4854
Enzymes [BR:
sapo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SAPIO_CDS4854
Messenger RNA biogenesis [BR:
sapo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
SAPIO_CDS4854
mRNA degradation factors
3'-5' decay
Ski complex
SAPIO_CDS4854
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Transket_pyr
Ski2_N
Transketolase_C
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
ResIII
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
27723926
NCBI-ProteinID:
XP_016642983
UniProt:
A0A084G772
LinkDB
All DBs
Position
Unknown
AA seq
1651 aa
AA seq
DB search
MSRYVLRASRMAASARPATFARTALTPAFAIRAARTYSASAATKEYTVRDALNEALAEEL
ESNPKVFVMGEEVAQYNGAYKVTKGLLDRFGDKRVIDTPITESGFTGLAVGAALSGLHPV
CEFMTWNFAMQAIDQIVNSAAKTLYMSGGIQPCNITFRGPNGFAAGVAAQHSQDYSAWYG
SIPGLKVVAPWSAEDAKGLLKAAIRDPNPVVVLENELMYGQSFPMSEAAQKDDFVLPIGK
AKIERVGKDLTIVSLSRCVGQCMIAAENLKNKYGVEAEVLNLRSVKPMDVESIVKSVKKT
RRLLAVESGFPAFGVGSEILALTMEYAFDYLDAPAQRITGAEVPTPYAQNLEEMSFPTEQ
LIENYAAKMLRVTLRILTHAMACEDALQACMERLSVLSCGAEEREDKPVSVIDDLLAGGP
RPVNRRKPATISNEHLKQQLEGEFLAPSASFPPEWLDRFQQRWESLVEFSELFHLAPTQS
RTVTRFVRHGLEGRVTGYKSVTVPANSATAKNSTSFLRKPAGRADFVRGAAGFFPFAPGG
LDGIEAAAAYEDLQLADGADTKAGASNKLERVITLGAEGGLLEVAPGLSRGINFGKKTPL
AEEDESQQVVRELREEPDQIHVSEGVDGEIVSPAAGEESPESDEDAEEDIDAILPVEFPA
LEPHGILAASSTRRAGREYAHMVDIKREMANFAELVPDMAREWPFELDTFQKEAVYHLEN
GDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAIYTSPIKALSNQKFRDFRLTFDDVGILT
GDVQINAEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDFERGVVWEEVIIML
PDHVSLILLSATVPNTYEFASWVGRTKKKDIYVISTTKRPVPLEHYLWAGKAIHKIVDSE
KRFLEQGWKDANHALQGKTRTLTESSAGARGGGRGHGRGGNQRGGQRGSGQRGNSSRGGG
GRGGGRGGPSRASHAPGHMGRTGRPGGYTSAAQDKTLWVHMVHFLKKNSLLPACIFVFSK
RRCEENADALSNQDFCTASEKSAIHMTIEKSIARLKPEDRVLPQIIRLRDLLGRGIAVHH
GGLLPIVKELVEILFAQTLVKVLFATETFAMGLNLPTRTVVFSGYRKHDGHSFRNLLPGE
YTQMAGRAGRRGLDSVGSVIIVPPGGDEAPPAGELRTMILGEPSKLRSQFRLTYNMILNL
LRVEALKIEEMIKRSFSEHATQQLLPEHEKAVRLSEADLARVKRDSCDVCDGVVDECHGA
SQTYRQLTTELYKGLLAIPIGRKMFTAQRLIVYSRDGIRTPGILLAEGTSIKGSPNNPMV
HVLEIKTAKKHVHIKTAHVPVEDIICLTRYVTKGIVPEIFQGGDAGRRAKERIHGLCRSW
DGIWEEADMSRFKSLYLQELVERRKKAAATAAASPALRCPDFVKHFAMCHDQWLIKDHIS
QLRQALSDQNLQLLPDYEQRIQVLKDLKFIDDDTRIQLKGKVACEIHSGDELVLTELILD
NVLADYEPAEIAALLSAFVFQEKTDCEPSLTSKLERGRATIVEISEKVNEVQTLHQVIQS
SDESNDFVSQPRFGLMEVVYEWARGMSFKNITDLTDVLEGTIVRTITRLDETCREVKNAA
RIVGDPELYQKMQAAQEMIKRDITAVASLYM
NT seq
4956 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggtacgttctccgtgctagccgaatggctgcttccgcaaggcctgccactttt
gcgaggaccgccttgactccagctttcgccatccgtgctgcccgaacctactctgcttcc
gcggccaccaaggagtataccgttcgcgatgcgctaaatgaggcgctagcggaagagctc
gagtccaacccgaaggtgttcgtgatgggtgaagaggtagcccaatacaacggagcctac
aaggttaccaagggtttgctcgacaggtttggcgataagagggtgattgatacacccatt
actgaaagcggattcaccggtctggctgtgggcgctgccctcagtggtcttcaccctgtt
tgcgaattcatgacgtggaactttgccatgcaagcgatagaccagatcgtcaactcggca
gcaaaaacactatacatgtctggaggtatccagccatgcaatatcacattccgtggtcca
aatggcttcgctgctggtgtcgccgctcagcactcccaggactactctgcctggtatggt
agcatcccgggacttaaagtcgtcgccccctggagcgccgaagacgcaaagggtctcctc
aaagcagctatcagggaccccaaccctgtcgttgtcctcgagaacgaactgatgtacggt
caatctttccccatgtccgaggccgcccagaaggatgacttcgtgcttccaatcggaaag
gccaagattgagcgcgtcggcaaggaccttacaattgtgtcgctatctcgatgcgtaggc
cagtgcatgatcgcggccgagaatctgaagaacaagtacggcgttgaggctgaagtcctc
aaccttcgatcagtcaagcccatggatgtcgaatctatcgtcaaatccgtcaagaagaca
cggcgactacttgctgtcgaatccggcttccccgccttcggcgttggttcggaaattcta
gcgttgaccatggaatatgcctttgactatctggatgccccggcccagcgtatcaccgga
gctgaggttccgacgccatacgcgcagaatctcgaagagatgagtttcccgaccgagcag
ttaatcgagaattacgcagccaagatgcttcgggtgacattgagaatactcacccacgcc
atggcctgtgaggatgccttgcaggcctgtatggagaggttatcggttctgagctgtggc
gctgaggaacgagaggataaacccgtatccgtcatcgacgacctactggctggaggaccc
agaccagtgaatcgaaggaaacctgccactataagcaacgagcacttgaagcaacagctc
gagggcgaatttttggcgccttccgcatcgtttcccccggagtggctggatcggtttcaa
caacgctgggagagcctggtagagttctcggaactgttccacctcgctccaacccagagt
cgaacagtcacacgatttgttcgtcatggcctagagggccgggtgacggggtacaaaagt
gtaacggtgccggcgaacagcgccactgccaaaaactccacctctttcctgcggaaaccg
gcaggcagggctgactttgttcgcggcgccgccggctttttcccttttgctccgggaggc
cttgacggtatcgaggctgctgctgcatatgaggatctgcagcttgccgatggcgctgac
accaaggcaggtgcttctaacaagctggagagagtcattaccctaggcgccgagggtggg
ctgttggaagtagcacccggactatcacggggcatcaattttggaaagaaaacacctctg
gctgaggaagatgagagtcagcaagtggtgcgagagctcagagaggagccggatcagata
catgtctccgaaggcgtcgacggagaaatcgtatcgcctgctgctggggaggagagtcct
gaatctgacgaggatgcggaagaagacatcgatgccattctccccgtcgagttccccgcg
ttggagccccacggaatcctggcggcatccagtacccgcagggctggccgggaatatgca
cacatggtagacatcaaacgagaaatggcaaacttcgcagagctagtgccggacatggct
agagaatggccgttcgagctcgataccttccaaaaggaggccgtctatcatctcgaaaac
ggcgactccgttttcgtcgccgcccatacgtcagccggaaagacagtcgtggcggagtac
gccatcgccctagctgccaagcacatgaccaaggcgatatatacctcgcccatcaaggct
ctaagcaatcaaaagtttagagacttccgtcttaccttcgacgatgttgggatcctcacc
ggagatgttcagatcaatgccgaagctagctgcctcatcatgacgacagaaatcttgcgg
agcatgctctaccgtggcgctgacctgattcgagacgtcgaattcgtgattttcgatgag
gtccattacgtcaatgatttcgagcgcggcgtcgtgtgggaggaggttatcatcatgcta
ccggaccatgtgtccctcatcctcctctctgccacggtcccaaacacgtatgaattcgcc
tcatgggtaggccggaccaagaagaaggatatttacgtcatctcgacgaccaagaggcca
gtgccattggaacattacctctgggcgggcaaggctatccacaaaatagtcgattccgag
aagcggttcctggagcaaggttggaaagatgccaaccatgcacttcaggggaagacgaga
acccttacagagagttctgctggggcacgaggaggaggccggggccacggtagaggtggc
aaccagcgaggcggccaaaggggctctgggcagcgaggaaactcttctcgaggaggcggt
ggccggggcggaggccgaggtggaccttcgcgtgccagccacgctcctggtcatatgggt
agaaccggacgtccaggtgggtatacgtccgctgcccaagacaaaacgctctgggtccac
atggtccatttcctgaagaagaacagccttctcccggcctgtatatttgtcttctccaag
aggagatgcgaggagaatgccgatgctcttagcaatcaggatttttgcactgcatccgag
aagagtgccatccacatgacgatcgagaagtctattgcgaggttaaagcccgaagaccgg
gtgcttccccaaatcatccgcctacgagatcttttaggccgaggtatcgctgtacaccac
ggtggtctactccctatcgtcaaggaactggtcgagatcttgttcgcccaaacactcgtc
aaagtcctatttgcgacggaaacttttgccatgggccttaatcttcccacccgcactgtc
gtcttttctgggtatcgaaagcatgatggccattccttccgcaatttgcttcccggtgaa
tacacccaaatggcgggtagggctggtcggagagggctggacagtgttggttctgtcata
attgtaccaccaggcggagacgaggcacctcctgccggcgagctgcggaccatgatcctg
ggcgaaccgtccaagttgcgatctcagttcaggctcacctacaacatgatattgaacctt
ctgcgggttgaggcgctcaagatagaggagatgattaagcgtagcttctcggagcatgcc
acccagcagcttctccccgagcatgagaaagctgttagactgtccgaggccgaccttgcc
cgcgtcaagcgagatagctgcgacgtctgtgatggcgtcgtggacgagtgccacggggcc
tcgcaaacatatcgccagttgacgaccgagctatataaagggctcttggctatccctatc
ggacgcaagatgtttactgcccagcgcttgatcgtctacagtagggacggaatacggact
cccggtatcctactcgctgaaggtaccagcatcaagggctcccccaataacccgatggtc
catgttctcgagattaaaaccgcaaagaaacacgtacatatcaagacggcccacgtcccg
gttgaggacatcatctgcctcacaagatatgttaccaaaggcattgtgcccgaaatattc
cagggtggggatgccggccgcagagcaaaggaacggattcatggtctatgccgctcatgg
gatggtatctgggaggaggcggacatgtcacgattcaaaagcctatatttgcaggagttg
gtggagaggagaaagaaggcggctgccacggcagcagcttcgcccgctttacgttgcccc
gactttgtaaaacacttcgcaatgtgtcacgaccagtggcttatcaaagatcacatttcc
cagctccgccaggctctttcggaccaaaacctccagctccttccggattacgaacagcgg
atccaggtacttaaagatctcaagttcatcgacgatgacacgcgcattcaactcaagggc
aaggttgcctgcgagatacattcaggagacgaacttgtcctcactgagctcatcctggac
aatgtcctggcggactacgaaccagcagaaattgcggcccttctttctgcattcgtgttc
caggagaagactgattgtgagccctcactgacaagcaagttggaacggggcagagcaact
atcgtggaaatcagcgagaaggtgaacgaagtccagacgctgcatcaagttatccaatct
tccgacgaatcaaacgactttgtgtcgcaaccccggtttggcctcatggaagttgtctat
gagtgggctagggggatgagtttcaaaaacatcacggatttgaccgacgtcctcgaaggc
actattgtccgcaccatcacccgcctagacgagacatgccgcgaggtaaagaacgcggcg
cgcattgtgggagaccctgagctttaccagaagatgcaggccgcccaggaaatgatcaag
cgagatatcacggcagtcgctagcttatacatgtga
DBGET
integrated database retrieval system
