Scedosporium apiospermum: SAPIO_CDS5515
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Entry
SAPIO_CDS5515 CDS
T06367
Name
(RefSeq) DNA-directed RNA polymerase II subunit rpb1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
sapo
Scedosporium apiospermum
Pathway
sapo03020
RNA polymerase
sapo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sapo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAPIO_CDS5515
09124 Replication and repair
03420 Nucleotide excision repair
SAPIO_CDS5515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sapo03021
]
SAPIO_CDS5515
03400 DNA repair and recombination proteins [BR:
sapo03400
]
SAPIO_CDS5515
Enzymes [BR:
sapo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAPIO_CDS5515
Transcription machinery [BR:
sapo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
SAPIO_CDS5515
DNA repair and recombination proteins [BR:
sapo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
SAPIO_CDS5515
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
27724587
NCBI-ProteinID:
XP_016642144
UniProt:
A0A084G4T3
LinkDB
All DBs
Position
Unknown
AA seq
1742 aa
AA seq
DB search
MANLYFSHSSAPIKTVEEIQFGILAPEEIKNMSVCHIIYPETMDELRIKPRDGGLNDPLL
GSIDRQFRCKTCTQAMGECPGHFGHIELAKPVFHPGFLKKVKKILEMVCHNCSKVKVDRT
DADFARAVRIREPKARFQKVWELCKKKNICDNEPRERMDPGVDGGQQKVIINHGGCGNIC
PEVRQQGLSILLKGGMADQEGAPSSKKKDMVPISPEQVLNIFRRISDDDMRDMGLNADYA
RPEWMIVTVLAVPPPPVRPSVSMDGTGTGMRNEDDLTYKLSDIIRANGNVKQAIREGSPN
HILRDFEQLLQYHVATYMDNDIAGLPRALQKSGRPVKAIRSRLKGKEGRLRGNLMGKRVD
FSARTVITGDANLSLDEVGVPRSIARTLTYPETVTPYNIGKLHRLVQNGPNEYPGARYVI
RADDVGVTRIDLRHHRRAGQITLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRVM
PYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVRELCMVPLNIVSPQRNGPLMGI
VQDSLAGIYKLCRRDTFLNKEQVMNVMLWVPKWDGIIPTPAIHKPIPLWTGKQIISMVIP
PTISLFNPSESREDAPLKDEGLLIQGGRLIYGLLSKKSVGAAGGGIVHLAYNELGPEGAM
AFLNGVQSVVNYWFLHVGHSIGIGDTIPDKATSEKVQIHIDERKAEVAALTAQATANQLE
ALPGMNIRETFENKVSIALNKARDDAGTTTQKSLRDMNNAVLMASSGSKGSSINISQMTA
LVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREG
LIDTAVKTAETGYIQRRLVKALEDVSVKYDGTVRNSLGDIVQFLYGEDGLDALCIEKQRM
DHLSMSNADFESRYRLDVMANKRPAALDALEYGNEIVGDPAVQQLLDEEYDALWSDRNNV
REINAKKKGDEMMQLPLNVIRIIDSARRLFGVDGSQRSDLRPQDVIPAVQAMLDRMTIVT
GNDPISHEANKNAMILFKAQLRSRLAFKRIAVGQRLNRLAFEHVLGELQGRWDKAFVNPG
EMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLATNIKTPSMVVYLE
GRNATQEAAKALRNAVEYTTLRSVTAFTEIYYDPDIMSTTIPEDMDMLESYWLTDDTMRH
TIDDQSRWLLRIVLDRQKMLDKGLDIEDVAARIRQDYPSDLAVISSDNNADEQVIRIRTI
SSNDKDEDSGVIEDDVMLKRFESHLLDTLTLRGVPGIERAFLTKGDKLIETDDGSLLAGK
TDPRCEEWYLDTSGSALREVLTISGVDTARTYTNNVWQILEVFGIEAARAAIVRELTQVL
AFGGSYVNHRHIALLVDVMSYRGSISAVTRHGINRADTGALMRCSFEETVEILLEAASSG
ELDDCRGISENVMLGQMAPMGTGNFEVFLDPKMLDTVISDHARMGLMPGMPVKGGPTEGA
ATPYDSGSPMADSGYVSLGPGTPDAGNFSPIVGAGSESPAGFQTSYGADGYGSGSFSPYS
RGGATSPFSTSPTSPMGGYGGYSPTSPAGYSPTSPLLDSSGGRFATSPSFSPSSPSFSPT
SPMLHRPTSPNYSPTSPTYSPTSPTSPRHYSPTSPNQFNSPTSPNYSPASPNYSPASPNL
HAAGATSPSYSPASPKWSPTSPQSYSPTSPTFQRSPAQQSPTSPSYSPTSPQWSPRTPGP
QN
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacctatacttctctcactcgagcgcgccgataaagacggtagaggagatccag
tttggcatcctggctcctgaagagatcaagaacatgagcgtgtgccacatcatctaccct
gagaccatggacgagttgcgcatcaagcctcgcgacggaggattgaacgatccccttctc
ggatccatcgatagacaattcaggtgcaaaacatgcacccaggcgatgggagagtgtcca
ggccatttcggccacatcgagttggcgaagcccgttttccacccaggcttcctcaaaaag
gtcaagaagattcttgagatggtttgccacaactgcagtaaagtgaaggtggataggacc
gacgcggactttgcgcgtgcagtccgaattcgagaacccaaggcgcgtttccagaaggtt
tgggaactctgcaagaagaagaacatctgcgacaacgagccccgcgaacggatggatccc
ggtgtagatggtggacagcagaaggtcatcatcaaccacggcggctgcggcaacatttgc
cccgaagttcgccagcaggggctcagcattcttctcaaaggtggcatggccgatcaagaa
ggtgctccttcttccaaaaagaaggatatggtgcccatttctcccgaacaggtgttaaac
atcttccgccgcatctcagatgatgacatgagggacatgggtctgaatgcagactatgct
cgccctgaatggatgatcgtcactgtcttggcagttccaccccctcccgtccgacccagt
gtctccatggacggtactggcaccggcatgcgaaacgaggatgatttgacttacaagctg
agtgacattattcgagcgaacggcaatgtaaagcaggctatccgggagggctctccaaac
cacattcttcgcgactttgagcagcttttgcaataccacgttgccacgtatatggataac
gacatcgcaggcttgccccgcgccctgcaaaagagcggccgacccgtcaaggccattaga
tcgcgtctaaagggaaaggagggtcgtttgaggggaaacctcatgggaaaacgtgtggac
ttctcagctcgtaccgtcatcaccggagatgccaacttgtcgctcgacgaagtcggtgtt
cctcgctcgatcgcgcgtacactcacgtaccccgagactgtcaccccttacaacattggc
aagcttcaccgcctcgtacaaaatggtccgaacgagtatcccggcgcccgatatgttatt
cgcgctgacgacgtcggcgttacccgaatcgatctgcgacatcaccgtcgcgcgggacag
attactctcgagtacggctggaaggtcgaacgccacctcatggatggcgattatatcatc
ttcaaccgtcagccgtctctgcacaaggagtcgatgatgggtcatcgagttcgcgtcatg
ccctactcgacattccgactgaatctctctgtcacgtcaccttacaacgccgatttcgat
ggtgacgagatgaatttgcacgtcccccaaagcgaagaaactcgcgccgaagttagggaa
ctttgcatggtgcctctgaacatcgtctcgccgcagcgaaacggtccgctcatgggtatt
gttcaggattcactggctggtatctacaagctttgccgtcgtgataccttcttaaacaag
gagcaggtgatgaacgtcatgctctgggtgcctaaatgggacggcatcatcccgacccct
gcgatccacaagccgatcccgctatggactggcaagcaaatcatcagcatggtcatcccg
cccaccattagcttgttcaatcctagtgagagccgagaggatgcgccgctgaaggatgag
ggtctcctcatccaaggtggaaggcttatttacggtcttctctcgaagaagagcgtaggt
gccgctggcggtggtatcgtgcacttggcctacaatgagcttggtccggagggtgccatg
gcgttccttaatggggttcagtccgtggtcaactattggttcttgcatgtcggccattct
attggaattggcgacacgattccagataaggcgaccagtgaaaaggtgcagattcatatc
gatgagcgcaaggcggaagtcgcagcgctcactgcccaggcaacggcaaaccagctcgag
gctttgcctggtatgaacatcagagagacctttgaaaacaaggtctccattgccttgaac
aaggctcgtgatgatgccggtaccaccacccagaagagtttgcgcgatatgaacaacgcg
gttctcatggcctcatcgggttctaaaggttcgtccatcaacatttcccaaatgacggcg
ctcgtcggccagcagattgtcgaaggaaagcgtattcctttcggattcaagtaccgaacg
ctgccccatttcaccaaggatgattactcccccgaggcacgtgggttcgtcgagaactct
tacctccgtggtcttacgccaactgagttcttcttccacgccatggctggtagagaaggt
ctcatcgatactgcagttaagacggccgagacgggctacatccaacgtcgtctcgtgaaa
gcgcttgaagacgttagcgtgaagtatgacgggaccgtccgcaactctcttggtgacatc
gttcagttcctctacggagaggatggcctcgacgctctatgcatcgaaaagcagcgtatg
gatcatctcagcatgtccaacgccgactttgaatcgcgctatcgtctagacgtcatggcc
aacaagcggcctgctgccctggatgctttggagtatggcaatgagatcgttggcgaccct
gccgtccagcaattgctggacgaggaatatgacgccctctggtctgatcgaaacaacgtc
cgtgagatcaacgccaagaagaagggtgacgagatgatgcagcttcctctcaacgtcatt
cgaatcattgattcggctaggaggctgtttggcgttgatggtagccagcgcagcgacctc
cgccctcaagacgtcatacccgcggtgcaggcgatgctcgatcgcatgactattgtcact
ggcaatgaccctatctctcatgaagccaacaagaacgccatgattctcttcaaggcacag
cttcgttcccgcctggctttcaagcgtatcgctgttggccagcgtctcaacaggctcgcc
ttcgagcacgttcttggtgagctgcagggccgttgggacaaggcattcgtgaaccctggc
gaaatggttggtgttttggcagcccagtccattggtgagcctgccactcagatgacgctc
aacacgttccattttgctggtgtatcgtccaagaacgttacattgggtgttccacgtctg
aaggaaattctcaacctcgccacaaacatcaagacgccttcaatggtcgtatatctcgag
ggacgaaacgccactcaggaggcggcgaaggctcttcgaaatgccgtcgagtatacgact
ctgcgatcagtcaccgcgttcacagaaatctactatgaccccgatatcatgtcgactacc
atccctgaggatatggacatgctcgaatcatactggctgactgatgacacgatgcgccat
acgattgatgaccaatctcgttggctccttcgtatcgtgcttgatcggcagaagatgttg
gataagggtttggacattgaggatgtcgctgcccgaatccgacaagactacccctccgat
cttgcagtcatttccagtgataacaatgccgacgagcaggtaatccgcattcgaacaata
tcgagcaatgacaaagatgaagactcgggtgttattgaggacgacgtaatgttgaagcgt
ttcgagagccatcttctcgacacgctcaccttgcgcggcgtgccgggcattgagcgagct
ttcttgacgaagggtgacaagctcatcgagactgatgacggatcccttttggctggcaag
acggaccctcgctgcgaggagtggtatctcgatacctccggcagtgcgctccgcgaggtc
ctcacaatttccggtgttgatacggcccgaacctataccaacaacgtttggcagatcctc
gaagtatttggcatcgaggcagcccgtgctgccattgtgcgcgagcttacgcaagtgtta
gcctttggtggttcctacgtcaaccatcgacatatcgcccttctcgtcgatgtcatgagt
tatcgtggttccatctcggccgtcactcgtcacggaatcaaccgagccgacactggtgcg
cttatgaggtgttcctttgaggaaacggttgaaattctcttggaggcggcgtccagtgga
gagctcgacgattgccgaggaatctcggagaacgttatgctgggacagatggcgcctatg
ggcacaggcaactttgaggtgttccttgatcccaagatgcttgataccgtcatttctgat
cacgcacgcatgggtctcatgcctggaatgccggtcaagggcggcccgacagagggtgct
gctacgccatacgacagcggatctccaatggcggattccggctacgtgtctcttggaccc
ggtacccccgatgccggcaacttctctcccattgtgggagcaggaagcgagtccccagct
ggcttccagacgtcttacggtgcagacggctatggttctggcagcttcagcccctactct
cgtggaggcgccacgagcccattcagtacatcccccacctcaccaatgggcggatatggt
ggatactcaccgacgtcacctgctggatactcgccgacttcgccgttactggatagctct
ggcggacgcttcgccacctctccttcgttcagcccttcttcgccttcattctcgcccacg
tctcccatgctccatcggcccacgagccccaactacagcccgacgtccccgacgtattcg
ccaacctctcccacgtcgcccaggcactactcgcctacgtcacccaaccagttcaactca
cccacatctcccaactactcgccggccagcccgaactacagcccggcctctcccaacctc
cacgcagctggggcaacctcgccctcgtactcaccggcgtcgccgaagtggtctcccacc
tcgccgcagtcatactcgcctacgagccctaccttccaacgaagcccggctcagcagtcg
ccgacgagccccagctactcccctacttcacctcagtggtctcctagaacccctggacct
cagaattaa
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integrated database retrieval system
