Scrofimicrobium appendicitidis: SAC06_02175
Help
Entry
SAC06_02175 CDS
T10714
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sapp Scrofimicrobium appendicitidis
Pathway
sapp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sapp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAC06_02175 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sapp03400
]
SAC06_02175 (mfd)
Enzymes [BR:
sapp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAC06_02175 (mfd)
DNA repair and recombination proteins [BR:
sapp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SAC06_02175 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
XBW08384
UniProt:
A0AAU7V7Y0
LinkDB
All DBs
Position
455250..458900
Genome browser
AA seq
1216 aa
AA seq
DB search
MSQLRGLLPLLARDEAVEAVTPYLWEPGHGTVVCPVGVRPALVAHALSNRSGTAPVVVVT
ATGREAEQMARAISCWGPEATVFPSWETLPHERLSPQLDTMARRVAVLRRLAHPEPNHPQ
AGPIQVLVVPIRALLQPIIGGLGDLRPVQARPGDFIDRDTLVHELVQLGYEPSDQVRGRG
QVSVHGGIVDVFPPAGDHPVRLEFFGDEIEEIRWFSLDDQRSLGAAETGLWAPPARELLL
TDAVKEKARAAQIPGAADLLELATEGIYSPGIESLAPLLVERMDSLVDLLPVGTLLFMSE
PERIQARAADLVTTSQEFLHASWGAAAAGGAIPLGAQSASLLSLDEVWGARKSASWWKLT
ALPGPELADQLAEQLAQREPAGADQTPADPPAAAVVASPRLAMIGAREVRPYRGDFARAT
SDLGQLERAGWNLVVTTPGSGSARRLVQVLAEGDVAARLDPELTELPSPGLVHVTAAEAG
AGFVLSAQELAILTEQDLTGGRSGGSTRDMRKMPARRKKGLDPLALRPGDFVVHEHHGVG
RFLEMVSRTTGSGEQQVTRDYLVLEYASSRRGGPRDTLYVPTTSLDLVSKYSGSDEPKLS
RMGGADWAKTKQKAQKAVQEIAAELVRLYAARQTAGGFAFSPDTPWQRELEDAFPFQETP
DQLLTMDEVKADMEKPVPMDRLLTGDVGYGKTEIAVRAAFKAIQDSKQVAVLVPTTLLVQ
QHYDTFRERYAGFPVNIAQLSRFSSPAEADRVRAGLLDGSVDLVIGTHSLLTGSVRFKDL
GLVIIDEEQRFGVEHKETLKALRTDVDVLAMSATPIPRTLEMAVAGIREMSVLQTPPEER
QPVLTFVGAYSSAQVAAAIRRELLRDGQVFFIHNRVESISSVAAGLAELVPEARIRVAHG
QLGEHQLEQVIVDFWNHEFDVLVCTTIVETGLDISNANTLIVDRADTFGLSQLHQLRGRV
GRGRERAYAYFFYPPGKTLTETALERLRTIAANADLGSGLAVAQKDLEIRGAGNLLGGAQ
SGHIEGVGFDLYVRMVSDAVAQYRGEKPVETTEVRLDLAVDAHLPEEYIPGESARLEVYA
KIAAVNDPGAMRELRDELADRYGPLPAPVERLFLLARLRSMLRQLGVDEAVTQGNYLRLG
PVELMDSTALRLKRLYPGSVIKPATRQLLVPLGGRRHHGEEPLVDEALVTWVEDLLRKVL
VPNRRVALARAAKQGG
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagctgcgcggcctgctgccgcttttagcccgggatgaagccgttgaggcggtc
acgccctatctgtgggaacccggtcacggcacggtggtgtgcccggtgggggtgcggcct
gcattggtagcacacgcactgtcgaaccggtccgggaccgcgccggtggtggtggtaact
gccaccggccgcgaagccgagcagatggcccgcgccatcagttgctgggggccggaggcc
actgtgtttccgtcctgggagaccctgccgcacgaacgtctttctcctcagttggacacc
atggctcggcgggtggcagtcctgcgtcgcctggcccacccggaaccgaaccacccccag
gccggaccgatccaagttctggtcgtgccgattcgcgccctgctgcagcccatcattggc
ggactgggggatctgcgtccggtccaagctcgtccaggcgacttcatcgatcgcgacacg
ctggtccacgagttggtccaacttggctacgagcccagcgaccaggtgcgggggcgcggc
caagttagcgttcacggcggaatcgtcgacgtgtttccgcccgccggggaccacccggtc
cggttggagttctttggtgatgagatcgaggagatccgctggttctcgctggatgaccag
cggagtttgggcgcggcagagaccggtctgtgggcccctcccgcacgcgaactgctgctg
accgatgcggtcaaagaaaaggcccgggcagcgcaaatcccgggagcggcagacctgttg
gagctggcgaccgagggcatctacagtccaggaatcgagtcgctggcccccctgctggtc
gagcggatggactcactggttgatctgttgccagtgggaacccttctgttcatgtccgag
ccggagcgaatccaggcccgggccgccgaccttgtcaccacttcgcaggagttcctgcac
gcctcgtggggtgcggctgctgccggtggggccattccgctgggcgcccagagcgcgtcg
ctgctcagcctcgatgaggtctggggggcccggaagtctgcctcgtggtggaaactgacc
gctctgcccgggcccgaactggccgaccaactggccgagcagctcgctcaacgggaaccg
gctggggccgaccagactcccgccgacccgcccgccgcggccgtggtcgcctccccgcgt
ctggccatgattggggcgcgagaagtccgcccttatcggggtgactttgcccgtgccacc
tcggatctgggtcaactggaacgcgccggctggaacctggtggtgaccacccccggttcc
ggctccgcccgccgcctcgtccaggtgctggctgagggcgacgtggccgcccgcctcgac
ccggagctgaccgaactgccctccccgggcctcgtccacgtgaccgcggcagaggctggg
gccggcttcgtgctttccgcccaagagctggcgatcctcaccgagcaggacctgaccggg
ggacgcagcggcggttcgacccgcgacatgcggaagatgccggcgcggcgaaagaaaggg
ctggacccgctcgcgctccggcccggagatttcgtggtccacgagcaccacggggtgggt
cgattcctggaaatggtctctcgcaccaccggctcgggtgaacagcaggtgacccgcgac
tacctggtgctcgagtacgcttcctcccgccgcggtgggcccagggatacgctctacgtg
cccaccacctcgctggatttggtctccaaatactcgggatcggacgagccgaagctctcg
cggatgggcggcgccgactgggcaaaaactaagcagaaagcgcagaaggcggttcaggaa
atcgcggccgaattggtgcgcctgtacgcggcccgccagaccgcgggtgggtttgccttc
agcccggacacgccctggcagcgcgaactagaggacgccttccccttccaggagactccc
gaccagctgttgaccatggacgaggtgaaggcggacatggagaagccggtacccatggac
cggctgctcaccggcgacgtcggctacgggaaaactgagatcgcggttcgggccgcgttc
aaggctattcaggactccaagcaggtggcggtgctggtgcccaccaccctgctggtgcag
cagcactacgacacgttccgggagcgctacgccgggttcccggtcaacatcgcccaactg
tcgcggttttcgtctccggctgaagccgatcgggtgcgggcgggcctgctcgacggcagc
gtcgacctggtgattgggacgcattcgctgctgaccgggtcggtccggttcaaggatctg
gggctggtcatcatcgacgaggagcagcgatttggggtcgagcataaggagacactgaag
gcgctgcgcaccgacgtggacgtgctcgcaatgtcggccacgccgatcccccggacgctg
gaaatggcggtggctgggatccgagagatgtcggtgctgcagaccccgccggaggagcgc
cagccggtgctcaccttcgtcggagcctactcttccgctcaggtggctgcggcgatccgg
cgggaactgctgcgcgacgggcaggtgttctttatccacaaccgggtcgagtcgatctcc
tcggtggcggcgggactggcagagctggtgccggaggcgcggatccgggtggcgcacggc
caactcggcgaacaccagctggaacaggtgatcgtcgacttctggaaccatgagtttgac
gtcctagtttgcacaacgatcgtcgaaaccgggctggacatctcgaacgcgaacacgctg
attgtggaccgcgcggacacgtttggactgtcacaacttcaccagttgcggggaagggtg
ggccgtgggcgcgaacgagcctacgcctacttcttctacccgccgggcaaaaccctgacc
gagacggcgctggagcggctccggaccatcgccgccaacgccgacctgggctccggactg
gcggtggcgcaaaaagacctggagattcgcggggccggcaacctgctgggcggagcccaa
tccggccacatcgagggggtcggctttgacctgtacgtcaggatggtctcggacgcggtc
gcccagtatcggggggagaagccggttgaaacgacggaagttcgactggacctggcggtg
gatgcacacctgcccgaggagtacatccccggtgagagcgctcgcctggaggtgtatgcc
aagatcgcggccgtcaacgatccgggggcgatgcgggagctgcgggacgaactggcggac
cggtacgggccgctgcccgccccggtggagcgcctgttcctgttagcgcggcttcggtcg
atgctccgccagctgggggtggacgaggcggtgacacagggcaactatctccgcctcggc
ccggtggaactgatggactcaaccgcgctccggctcaagcgcctctaccccggctccgtg
atcaagccggctacccgccaactgctggtgcccctcggcgggcgccgccaccacggagag
gagccactggtggacgaggcgctggtaacttgggtggaggatctcctgcgcaaggtcctt
gtacccaaccggcgtgtggcattggcccgcgccgccaaacagggcgggtga
DBGET
integrated database retrieval system
