Salinispora arenicola: Sare_3336
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Entry
Sare_3336 CDS
T00613
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
saq
Salinispora arenicola
Pathway
saq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sare_3336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saq03019
]
Sare_3336
03400 DNA repair and recombination proteins [BR:
saq03400
]
Sare_3336
Enzymes [BR:
saq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sare_3336
Messenger RNA biogenesis [BR:
saq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sare_3336
DNA repair and recombination proteins [BR:
saq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Sare_3336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
ABV99139
UniProt:
A8LW30
LinkDB
All DBs
Position
3847618..3849468
Genome browser
AA seq
616 aa
AA seq
DB search
MPSPTDQRPAALETLRRVFGYDAFRGFQQEVIAHLTAGGDALVLMPTGGGKSLCYQIPAL
LRDGVAVVVSPLIALMQDQVDALTAVGVRAGFLNSTLDLDARRAVERAFVAGDLDLLYLA
PEALGTRGVQHLLDQGNISLFAIDEAHCVSQWGHDFRPDYLTLSVLHERWPGVPRIALTA
TATSATRAEISTRLQLTSARHFVASFDRPNIQYRIVPKREPKRQLLALLRDEHPGDAGIV
YCLSRATVEKTAEFLVDNGIAALPYHAGLDAATRARHQQRFLREDGLVMVATIAFGMGID
KPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPSTAWLAYGLTDVVQQRRLIDTSEGDLAH
RRNLAAHLEAMLALCETVRCRRVQLLDYFGETATACGNCDTCLQPPESWDGTIAAQKLLS
TVYRLDRERHQRFGTGHCVDILLGRATDKVQQHRHDSLTVFGIGTELSEAEWRGVVRQLL
AEGLLAVEGDYGTLALTDTSAEVLGRRRTVMLRREPARTARPAKPRGAATMVAELAPAAA
EVFERLRAWRAATAREQGVPAYVIFHDATLRQIASDAPSALADLARVSGVGEAKLAKYGE
QVLAVLAGGDADPHTA
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgccctcccccaccgaccagcgccccgccgcgctggagacgctgcggcgtgtcttcggc
tacgacgccttccggggcttccagcaggaggtcatcgcacacctgacggccggcggggac
gccttggtgttgatgcccaccggtggcggcaagtcgctgtgctaccagatcccggcactg
ctgcgggacggagtcgcggtggtcgtgtcgccgttgatcgcactgatgcaggaccaggtc
gacgcgctgaccgcggtcggggttcgggccggcttcctcaactcgacgctggacctcgac
gcccgtcgcgccgtcgagcgggccttcgtcgccggtgacctggacctgctctacctcgcc
ccggaagccctgggcacccggggcgtgcagcacctgctcgaccaagggaacatcagcctg
ttcgcgatcgacgaggcacactgtgtgtcgcagtgggggcacgacttccgcccggactac
ctcaccctgtcggtgctgcacgagcgttggcccggggtgccccgcatcgcgttgaccgcc
accgcgaccagcgccactcgggccgagatctcgacccggctgcagctcacctcggcccgg
cactttgtcgccagcttcgaccgccccaacatccagtaccgcatcgtcccgaagcgggag
ccgaagcggcagctgctggccctgctgcgggacgagcacccgggggatgccggaatcgtc
tactgcctgtcccgggccaccgtggaaaagacagcggagttcctggtcgacaacggtatt
gccgcactgccgtaccacgccggcctggacgcggccacccgagctcgacaccagcagcgc
ttcctgcgggaggacggcctggtcatggtcgcgacgatcgcgttcgggatgggcatcgac
aagcctgacgtgcggttcgtcgcccacctcgacctgccgaagtcggtggagggctactac
caggagaccggccgcgccgggcgggacggcctgccgtcgacggcctggctcgcctacggt
ctgacggatgtggtgcagcaacgccggctgatcgacacctcggagggggatctggcgcac
cggcgtaacctcgccgcccacctggaggcgatgctcgcgctctgcgaaacggtccgctgt
cgccgggtgcagctgctggactacttcggcgagaccgccaccgcctgcggcaactgcgac
acgtgcctgcagccacccgagtcgtgggacggcacgatcgccgcgcagaagctgctgtcc
acggtgtaccggctcgaccgggagcgacaccagcggttcggcaccgggcactgtgtcgat
atcctgctcggccgcgccaccgacaaggtccagcagcaccggcacgactccctgacagtg
ttcgggatcggcaccgagctgagcgaggcggagtggcggggtgtggtccggcagctgctc
gccgaagggctgctggcggttgagggcgactacggcaccctggccctcaccgacaccagc
gcggaggtgctgggccggcgccgcaccgtcatgctgcgccgcgaaccggcccggaccgcc
cggccggcgaagccacgcggcgcggccaccatggtcgccgagctggccccggccgccgcc
gaggtcttcgagcggctacgcgcctggcgggccgccacggccagggaacagggcgtgccc
gcctacgtgatcttccacgacgccacgctgcggcagatcgccagcgacgcaccgtcagca
ttggctgacctggcccgggtcagtggtgtcggcgaggcgaaactcgcgaagtacggcgag
caggtgctggccgtcctcgccggcggcgatgcggacccacacaccgcctga
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