Salinispora arenicola: Sare_3339
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Entry
Sare_3339 CDS
T00613
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
saq
Salinispora arenicola
Pathway
saq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
saq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sare_3339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saq03400
]
Sare_3339
DNA repair and recombination proteins [BR:
saq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sare_3339
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Sare_3339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
AAA_29
RsgA_GTPase
AAA_23
AAA_16
nSTAND1
AAA_25
AAA_21
AAA_33
AAA_22
APS_kinase
NACHT
DnaJ_CXXCXGXG
ATPase
MeaB
Viral_helicase1
cobW
ScfRs
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ABV99142
UniProt:
A8LW33
LinkDB
All DBs
Position
complement(3852436..3855399)
Genome browser
AA seq
987 aa
AA seq
DB search
MADRLIIRGAREHNLRDVSLDLPRDALIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSS
YARQFLGQMDKPDVDFIEGLSPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGQPH
CPVCGERISRQTPQQIVDRVLAMAEGTRFMVLAPVVRGRKGEYVDLFAELQAKGYARARV
DGVVHPLTEPPKLKKQEKHTIEVVIDRLTVKPSAKQRLTDSVEAALGLSAGLVLLDFVDL
PEDDPDRERRYSEHLACPNDHQLAIEDLEPRVFSFNAPYGACPECTGLGTKKEVDPELVI
PDPERTLREGAIQPWSGGHSLEYFLRLLEALGEAEHFDIDTPWRALPSRAQKTILHGAED
QVHVRYRNKYGRERSYYTGFEGVMQWIERRHSDTESEWSREKYEGYMRDVPCAACGGARL
KPEVLAVTVAGRSIAEVCAMSVGECAELLAGVELTDRQRLIAERVLKEINARLRFLLDVG
LDYLSLDRPAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLLRL
RGLGNTLIVVEHDEDTIRTADWIVDIGPGAGEHGGRIVHSGSVPALLDNPESMTGAYLSG
RKEIPTPGQRRPQTPGRELTVQGAREHNLRNLTVTFPLGQLIAVTGVSGSGKSTLVNDIL
YAVLANQINGARLVPGRHTRVAGLEHVDKVVGVDQSPIGRTPRSNPATYTGVWDHVRKLF
AETVEAKVRGYGPGRFSFNVKGGRCEACSGDGTIKIEMNFLPDVYVPCEVCKGARYNRET
LEVHYKGKTVSDVLEMPIEEAAEFFSAIPAIHRHLSTLVDVGLGYVRLGQPAPTLSGGEA
QRVKLASELQKRSTGRTVYVLDEPTTGLHFEDIRKLLMVLEGLVDKGNTVITIEHNLDVI
KTADWIIDMGPEGGHRGGTVLATGTPEEVAEVPDSHTGQFVRQVLKLDGEAKGAAAATSR
AARANGVKARANGAKTRAARKAPAKAR
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaccgactgatcatccgtggcgcccgcgagcacaacttgcgtgacgtcagtctc
gacctgccgcgggacgcgctcatcgtgttcaccgggctgtccgggtccggcaagtcgagc
ctggccttcgacacgatcttcgccgaggggcagcggcgctatgtcgagtcgctgtcgtcc
tatgcccggcagttcctgggccagatggacaagccggacgtggacttcatcgagggtctc
agtccggccgtctccatcgaccagaagtcgacctcgcgcaaccctcggtcgacggtgggc
acgatcaccgaggtctacgactacctgcgtctgctcttcgcccgcatcggtcagccgcac
tgcccggtctgcggtgagcggatctcccgccagaccccgcagcagatcgtcgaccgggtc
ctcgccatggccgagggcacgcggttcatggttctcgcgccggtcgttcgtggtcgtaag
ggcgaatatgtggaccttttcgccgagctccaggcgaagggctacgcgcgcgcccgcgtg
gacggggtggtgcacccgctgaccgagccaccgaagctcaagaagcaggagaagcacacc
atcgaggtggtcatcgaccggctcaccgtgaagccgtcggccaagcagcggctgacggat
tcggtcgaggcggcgctcgggctctccgccggtctggtcctgctcgacttcgtcgacctg
ccggaggacgacccggatcgggagcgccgctactcggagcacctggcctgtcccaacgat
caccagctcgcgatcgaggacctggagccccgggtcttctccttcaacgcgccgtacggt
gcgtgcccggagtgcaccggcctgggtacgaagaaggaggtcgacccggagctggtgatc
cccgacccggagcgcaccctgcgggagggggcgatccagccctggtccggcgggcacagc
ctggaatacttcctgcgcctgctggaggcgctgggcgaggcggagcacttcgacatcgac
acgccgtggcgggcgttgccgtcccgggcgcagaagacgatcctgcatggcgccgaggac
caggtgcatgtgcggtaccggaacaagtacggccgggagcgctcgtattacaccgggttc
gagggcgtgatgcagtggatcgagcgccggcactccgacaccgagtcggagtggtcccgg
gagaagtacgagggttacatgcgggacgtgccctgcgcggcctgcggcggtgcccggctc
aagccggaggtgctcgcggtgaccgtcgccggtcggagtatcgccgaggtgtgcgcgatg
tccgtcggtgagtgcgccgagctgctcgccggcgtcgaactgaccgatcggcagcggttg
atcgccgagcgggtcctcaaggagatcaacgccagactgcggttcctgctggacgtcggc
ctcgactatctctccctggaccgtcccgccggcaccctctccggcggcgaggcgcagcgc
atccggttggccacccagatcggttccggcctggtcggggtgctctacgtgctggacgag
ccctcgatcggtctgcaccagcgggacaaccaccggttgatcgagacgttgctgcggctg
cgggggctcggcaacacgttgatcgtggtcgagcacgacgaggacaccatccgcaccgcg
gactggatcgtcgacatcggcccgggggcgggcgagcacgggggccggatcgtgcacagc
gggtcggtcccggcgctcctggacaacccggagtcgatgaccggggcgtacctgtccggc
cggaaggagatcccgacgccggggcagcgccgtccgcagacgccgggacgggagttgacg
gtgcagggggcccgcgagcacaacctgcggaacctgaccgtgacgttcccgctcggtcag
ctgatcgccgtcaccggggtcagcggttccggtaagtcgaccctggtcaacgacatcctg
tacgcggtcctggccaaccagatcaacggggcgcggttggtgcccggccggcacacccgg
gtcgccggcctggagcatgtggacaaggtcgtcggggtggaccagtcgccgatcggtcgc
accccacgttccaatccggccacctacaccggcgtctgggaccacgttcgtaagctgttc
gccgagaccgtcgaggccaaggtccgggggtacgggccgggccggttctcgttcaacgtc
aagggcggccggtgtgaggcgtgctccggtgacggcaccatcaagatcgagatgaacttc
ctgcccgacgtgtacgtgccgtgcgaggtctgcaagggcgcccgctacaaccgggagacc
ctggaggtgcactacaagggcaagaccgtctcggatgtgctggagatgccgatcgaggag
gcggcggagttcttctccgccatcccggccatccaccggcacctcagcacgctggttgac
gtgggccttggctacgtccggctgggccagcccgcgccgaccctctccggcggggaggcg
cagcgggtgaagctcgcctccgagctgcagaagcgctccaccgggcggacggtctacgtg
ctcgacgagccgaccaccggactgcacttcgaggacatccgtaagctgctgatggtgctg
gaggggctggtcgacaagggcaacacggtgatcacgatcgaacacaacctcgacgtgatc
aagaccgctgactggatcatcgacatggggccggagggcggccaccgcggcggcacggtg
ctcgccaccggcaccccggaggaggtcgcggaggtgcccgacagccacaccggccagttc
gtgcgccaggtgctcaagctcgacggtgaggccaagggcgccgcggcagccacctctcgc
gcggccagggccaacggcgtgaaggcccgggcgaacggtgccaaaacccgcgcggctcgg
aaggcgcccgccaaggcccggtga
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