Salinispora arenicola: Sare_4408
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Entry
Sare_4408 CDS
T00613
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
saq
Salinispora arenicola
Brite
KEGG Orthology (KO) [BR:
saq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saq03032
]
Sare_4408
03400 DNA repair and recombination proteins [BR:
saq03400
]
Sare_4408
Enzymes [BR:
saq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Sare_4408
DNA replication proteins [BR:
saq03032
]
Prokaryotic type
DNA Topoisomerases
Sare_4408
DNA repair and recombination proteins [BR:
saq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Sare_4408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
ABW00186
UniProt:
A8M5X0
LinkDB
All DBs
Position
complement(4981377..4984226)
Genome browser
AA seq
949 aa
AA seq
DB search
MPSNAGTTRLVIVESPAKAKTISGYLGPGYVVEASFGHVRDLPRNAADVPAKYKGEAWAR
LGVDVDNGFHALYVVSSDRRQQISKLTKLAREVDEILLATDEDREGEAIAWHLVETLKPK
VPVKRMVFHEITKPAIQAAVANPREIDRDLVDAQEARRILDRLYGYEVSPVLWKKVMPKL
SAGRVQSVATRTVVERERQRMAFRTAEYWDILATLAVEQAGEGPRTFNATLVALNGDRIA
AGKDFEPTTGRVRPGAGVVHLDESGAHGLAARLAGRPFTVTRVEEKPYRRRPYAPFITST
LQQESARKLRFSSQQTMRTAQRLYENGYITYMRTDSVNLSETAIAAARRQIVELYGERSV
PPEPRRYTGKVKNAQEAHEAIRPAGDTFRTPGELRNELSVEEYKLYELIWRRTIASQMTD
AVGFSVSVRIRAVTSAGEEADFGATGKTITDPGFLRAYVESSDDENAEAEDAERRLPTLV
KDQPLTGEQLVAQGHHTQPPARYTEASLVKALEELGIGRPSTYASIMQTIQDRGYVVKRG
QAMIPSFLAFAVVGLMERHYPRLIDYGFTASMENELDEIAGGDHAAVDFLTAFYFGTTNG
AGDQDIARSGGLKKLVTENLSDIDARSVNSIPLFTDEQGRVVVVRVGRYGPYLQRELPGE
AATPADGEEGGGQGDRAPIPDGLAPDELTPEKVHELFLGGGGERKLGEDPATGEPILLKS
GRFGPYVASGERKSSLLRSQSPDALTLEEALRLLSLPRLVGVDPEGNEVFANNGRYGPYV
KRGEEFRSLDSEEKMFTVTLDEALALLAAPKTRQRRAPAPPLRELGADPLTEKPLVIKDG
RFGPYVTDGETNASLRRGQTPEALSLEQASEMLAEKRAKGPAPRKRAAKKATPAKRSTPA
KKAAATKTTATGKATKKTAAATKVAKKTATAKTTTAKQAKPKRASSTTE
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
gtgccgagcaatgctggaaccacccgtctggtcatcgtcgagtccccggcgaaggccaag
acgatctcgggctacctcggcccggggtacgtcgtggaggccagtttcgggcacgtccgc
gacctgccgcgcaacgccgccgacgtgccggcgaagtacaagggcgaggcgtgggcccgg
ctcggcgtcgatgtcgacaacggcttccacgccctctacgtcgtctcgtcggaccgccgg
cagcagatcagcaagttgaccaagctggcccgggaggttgacgagattctcctggccacg
gatgaggaccgggagggcgaggcgatcgcctggcacctggtggagacgctcaagccgaag
gtgccggtcaagcggatggtcttccacgagatcaccaagccggcgatccaggccgcggtg
gcgaacccgcgtgagatcgaccgggacctggtcgacgcgcaggaggcccgccgcatcctc
gaccggttgtacggctacgaggtgtcaccggtgctgtggaagaaggtcatgccgaagctt
tcggcgggccgggtgcagtcggtggcgacccgcaccgtggtcgagcgggagcgccagcgg
atggcgttccgtactgccgagtactgggacatcctggccacgctggccgtcgaacaggcc
ggcgagggcccccgcaccttcaacgccaccctggtggcgctcaacggtgaccggatcgcc
gccggcaaggacttcgagccgaccaccgggcgggtccgtcccggcgcgggtgtcgtccac
ctcgacgagagcggggcccacgggctggccgcccggttggcaggtcggccattcaccgtc
acccgggtcgaggagaagccctaccgtcgccgcccctacgcgccgttcatcacctccacc
ctgcaacaggagtcggcccgcaaactgcgcttctcctcccagcagacgatgcgcaccgcg
cagcgactctatgagaacggctacatcacctatatgcgaaccgactcggtgaacctgtcg
gagaccgccatcgcggcggcccgccggcagatcgtcgagttgtacggcgagcgcagtgtc
ccgccggagccgcgccgctacaccggcaaggtgaagaacgcgcaggaggcgcatgaggcg
atccgccccgcgggggacaccttccgcacccccggtgagctgcgcaacgaactctcggtt
gaggagtacaagctctacgagttgatctggcggcgcaccatcgcctcccagatgaccgac
gcggtgggtttcagtgtctcggtgcgtatccgcgccgtcacctccgccggtgaggaggcc
gacttcggcgccaccggcaagaccatcaccgacccgggttttctccgtgcctatgtggag
tccagcgacgacgagaacgccgaggcggaggacgccgagcggcgtctgccgacgctggtg
aaggaccagccgcttaccggcgagcagctggtggcgcagggtcaccacacccagccgccc
gcccgctacaccgaggcgtccctggtcaaagcgctggaggaactgggcatcggtcgcccg
tcgacgtacgcgtcgatcatgcagacgatccaggaccgggggtacgtcgtcaagcgtggc
caggcgatgatcccgtccttcctggcgttcgccgtggtcgggctgatggagcggcactac
ccacgcctgatcgactatggcttcaccgccagcatggagaacgagctggacgagatcgcc
ggtggcgaccacgcggcggtcgatttcctcaccgcgttctacttcggcaccaccaacggc
gccggtgaccaggacatcgcccgttccggtgggctgaagaagctggtcaccgagaacctc
agcgacatcgacgcacggagcgtcaactcgatacccctgttcaccgacgaacagggacgg
gtcgtcgtcgtccgggtgggccgctacgggccgtacctgcagcgggaactacccggcgag
gcggcgacgcccgccgacggtgaggagggcggcggccagggcgaccgggcaccgattcca
gacggtctggcacccgacgagctgaccccggagaaggtgcacgagctgttcctcggcggt
gggggcgagcgcaagctcggcgaggacccggccaccggagagccgatcctgctcaagtcg
ggccggttcggcccgtacgtggccagcggggagcgtaagtcgtcactgctgcgctcccag
tcgccggacgcgctcaccctcgaggaggcgttgcgactgctgagcctgcctcgcctggtc
ggtgtcgacccggagggcaacgaggtcttcgccaacaacggccgctacggaccgtatgtc
aagcggggcgaggagttccggtcgctggactccgaggagaagatgttcacggtcacgctg
gatgaggcgctggccctgctggccgccccgaagacccggcagcgccgggcgcccgcgcct
ccactgcgggaactgggcgccgacccgctgaccgagaaaccgctggtcatcaaggatggg
cggttcgggccgtacgtgaccgacggtgagaccaacgcgtcattgcggcgcgggcagacg
ccggaggcgttgagcctggagcaggcgtcggagatgctcgccgagaagcgggcgaagggt
ccggcgccgcggaaacgggcggccaagaaggccacgccggccaagaggtccacgccggcg
aagaaggcggcggcgacgaagaccaccgcgacgggcaaagccacgaagaagaccgccgcg
gcgaccaaggtggcgaagaagacggcgacggcgaagaccacaacggccaagcaggcgaaa
ccgaagcgggcgagcagcacgaccgagtga
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