Salinispora arenicola: Sare_5005
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Entry
Sare_5005 CDS
T00613
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
saq
Salinispora arenicola
Pathway
saq03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
saq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Sare_5005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saq03400
]
Sare_5005
Enzymes [BR:
saq01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Sare_5005
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Sare_5005
DNA repair and recombination proteins [BR:
saq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Sare_5005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
Zn_ribbon_RRN7
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
ABW00749
UniProt:
A8LWE4
LinkDB
All DBs
Position
5673522..5674382
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AA seq
286 aa
AA seq
DB search
MPELPEVEALADYLRRRAVGRRVDRLEIAAISALKTYDPAITAAAGRQVTDARRLGKFLD
LVLDADLHLVIHLARAGWLQFREEFPSRGPLRPGKGPVALRVRLDDGSGFDLTEAGTQKS
LAIYLVTDPAVVPGVARLGPDALAVDPATFAERLRGRRGQVKGVLTDQTVLAGVGNAYSD
EILHTARLSPFALTSRLTDDQLAALHTATRDVLGEAVSRSVGQRAAELKGEKRSGLRVHA
RTGLPCPVCGDTVREVSFADSSLQYCPACQTGGKPLADRRLSRLIR
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaactaccggaggtagaggcgctcgccgattatctgcgtcgacgcgccgtcggc
cggcgggtcgaccgcctggagatcgccgcgatcagcgccctgaagacgtacgacccggca
atcacggcggcggctggtcggcaggtcaccgacgcccggcggctcggcaagttcctcgac
ctggtgctcgacgccgacctgcacctggtgatccaccttgcccgcgcgggctggctacag
ttccgggaggagttcccgtcccgtggcccgctacgccccggcaagggtccggtggcactg
cgggtacgcctcgacgacggctccggcttcgacctgaccgaggccggtacgcagaagagt
ctcgccatctacctggtgaccgatccggcggtggtgcccggggtggcccggctcggcccg
gacgcgctcgccgtcgacccggccaccttcgccgagcgactccgcggccgcaggggccag
gtcaagggggtactcaccgatcagacggtgctcgccggggtgggcaacgcgtactccgac
gagatcctgcacacggcccggttgtcaccgttcgcgctgacctcccggctgaccgacgac
cagctggccgccctgcacacggcgacccgggacgtgctcggcgaggcggtgtcccggtcg
gtgggacaacgggctgcggagctcaaaggcgagaagcgctccgggctacgggtacacgcc
cgaaccgggctgccctgcccggtctgtggtgacaccgtacgggaggtctccttcgctgat
tcgagcctccagtactgtccggcgtgccagaccggcggaaagccgctcgcggaccgacgg
ttgtcccgacttatacggtga
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