Schlegelella aquatica: OMP39_00770
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Entry
OMP39_00770 CDS
T08587
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
saqa
Schlegelella aquatica
Pathway
saqa02020
Two-component system
saqa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
saqa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
OMP39_00770
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OMP39_00770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saqa03021
]
OMP39_00770
Transcription machinery [BR:
saqa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OMP39_00770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
HTH_Crp_2
DUF3349
HTH_23
CENP-H
Motif
Other DBs
NCBI-ProteinID:
UZD55164
LinkDB
All DBs
Position
complement(168182..169696)
Genome browser
AA seq
504 aa
AA seq
DB search
MKPSLQVRLSQHLALTPQLQQSIRLLQLSTLELHQEVEQMLEQNPFLEPEEDPAGEAAPA
AAVPERTPASETLAAEAEGGDGFEAPEAPSMDSVEFGATEREDWENGTERDDFDGIRETP
APRNGAIDDGELDPIDRASPGISLQDHLRQQLMGMRLAPEDAAAVMVLIESLDEDGYLAD
PLEEIAARLAGDDAEAREELLERLQCALKWLQSLEPTGVGARNLSECLCLQLQALPRSEA
QVVATLICKHHLETLARRDIKKLMASTGADEETIKQAQSLIVSLEPKPGRPFTRAEAHIV
VPDVIVQKAGRQWKVVLNPDVMPRLRINDLYAQALKQQRAHEGAQALSARLQEARWFMKN
IQQRFETIQRVAQAIVERQKNFFTHGEIAMKPLVLREIADELGLHESTISRVTTAKYMAT
PFGTFELKYFFGSSLNTEAGGNASSTAVRALIKQLVAAEDPKKPLSDSQISEMLGEQGIQ
VARRTVAKYREALKIAPANLRKAL
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgaagccttccctgcaggtccggctgtcgcagcacctggcgctcacgccccagctgcag
cagtcgatccgcctgctgcaactctccacgctcgagctgcaccaggaagtcgagcagatg
ctggagcagaaccccttcctcgagcccgaggaagaccctgcgggcgaagccgcgccggcc
gccgccgttcccgagcggacccccgcctcggaaaccctcgcggccgaggccgagggcggc
gacggcttcgaggccccggaagcgccgagcatggacagcgtcgagttcggcgccaccgag
cgcgaggactgggagaacggcaccgagcgcgatgatttcgacggcatccgcgaaacgccc
gcaccccgcaacggggcgatcgacgacggcgagctcgacccgatcgaccgggcctccccc
ggcatcagtctgcaagaccacctgcgccagcagctcatggggatgcggctggcccccgag
gatgcggccgcggtgatggtgttgatcgagtcgctcgacgaagatggctacctcgccgac
ccgctggaggagatcgccgcgcgtctggcgggcgacgacgccgaggcgcgcgaggagttg
ctcgagcggctgcaatgcgcgctcaagtggctgcagagcctggagcccaccggggtgggc
gcgcgcaacctgtccgaatgcctgtgtctgcaattgcaggcgctgccgcgcagcgaggcg
caggtggtggcgaccctcatctgcaagcaccacctcgagacgctcgcgcggcgcgacatc
aagaagctgatggcctccaccggggccgacgaggagacgatcaagcaagcccagagcctc
atcgtctcgctcgagcccaagccggggcgccccttcacgcgcgccgaggcccacatcgtc
gtgcccgatgtcatcgtgcagaaggccgggcggcaatggaaggtggtgctcaaccccgac
gtgatgccccggcttcgcatcaacgacctctacgcccaggcgctcaagcagcagcgcgcc
cacgagggcgcgcaggcgttgagcgcgcggctgcaggaggcgcgctggttcatgaagaac
atccagcagcggttcgagaccatccagcgcgtggcgcaggccatcgtcgagcggcagaag
aacttcttcacacacggcgagatcgcgatgaagccgctcgtgctgcgcgagatcgccgac
gaactcgggctgcacgaatcgaccatctcgcgcgtgaccaccgccaagtacatggccacg
cccttcggcacgttcgagctcaagtacttcttcggctcgtcgctcaacaccgaggcggga
ggcaatgcctccagcaccgccgtgcgtgcgctcatcaagcagctggtggccgccgaggac
ccgaagaagccgctgtcggacagccagatcagcgagatgctcggcgagcagggcatccag
gtggcgcgccgcaccgtggccaagtaccgcgaggcgttgaagatcgcgcccgccaatttg
cgcaaggcgttgtga
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