Caldimonas aquatica: OMP39_02350
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Entry
OMP39_02350 CDS
T08587
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
saqa
Caldimonas aquatica
Pathway
saqa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
saqa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
OMP39_02350 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saqa03400
]
OMP39_02350 (recB)
Enzymes [BR:
saqa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
OMP39_02350 (recB)
DNA repair and recombination proteins [BR:
saqa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
OMP39_02350 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
UZD55454
LinkDB
All DBs
Position
complement(519183..522968)
Genome browser
AA seq
1261 aa
AA seq
DB search
MNPQRDLFTETTETNETTEPIEARDTMPATTPAAEREDALRPLDVFHCPLDGLRLIEASA
GTGKTWNICGLYLRLLLERGLDVSQVLVVTFTNAATAELRERIRQRLLDTWLHVQGRGPA
TADTFVPRLLDALRGRGLPDEVLAKRLQWALAGFDEAAIFTIHGFCQRALADTPFTARVP
MRAELLQDDRELLLEAVQDFWRLRVEDLPPALAAYLLTRGDSPARWAALLKRHLAKPLAE
VRWPEGLEEAQELDVAELERTHAVARQAWGAAREEVVRLLEAARPRLHATHYKPQALARA
IASWDGWMACESATAGLDEDFPKLELLTAAKLRACTKARQTTPEHPFFDVAEAAHGALVR
AESALAYARVALLREMIGHCTETLKALKRRRRVIAFDDMLSNLHARLHGPDGPVLASTLR
ARFPAALIDEFQDTDPLQFAIFHRLYATPQRPPLFLVGDPKQAIYRFRNADLHTYLAARR
HADAQYTLEANQRSSGPLVRALNALFGENPRLFMLEGLRYHPVTVGDKPRPALHDGGPAR
APLQVWWLPHQEDGSLLEWRAAERLVTQRVAAEIARLLASARRGEVRIGERPLGAGDIAV
LVRSHAEGSRMRRALAALGVGSVELSQSSVFASAEAEELDALLGAMLEPGREGRLKAALA
TTLMGRDAGALDALANDEEAMIEQVQRFEDYRRAWLARGVGPMLREWMAREGVAERLLGC
PDGERRMTNLLHLIECLQQASSQHPNPDALLRWLQVQRHDPRPDEATQLRLESDRHLVQI
VTIHRSKGLEYGIVFCPFLWRSRRAPSASGDAVEYHEQGRTVIDYRKDLDPAFDDQAIRR
IQRLEDASEFLRLLYVALTRAVHRCVLVAGCYLAHSGPALKPTESARGLLNWVVAGAGLS
PEEWMDGEREIGSIRTDWEEWARRAAPHVSFEVLPAITAEPLPAEAAEPAAIAALPAPGH
LPSPWWIGSYSALVHGAAHEAAALERDQRTADDEGVDAASEPAVELDEDDPLRFPRGAAA
GECMHTVFELADFADRGTWASAIATGLRRLRGAEPHGEEPAAAAQTRMLERLLAQVLHSE
LPLGPRALRLADLSAGSRVHEMEFYLPAPRLEPARLQRRLQAAGYAVPALSAHALQGYLR
GFIDMVFEHEGRYYVLDWKSNHLGESPSAYGRDRLAAVMAREGYHLQALLYLVALHRHLA
LRLPGYDAQQHLGGAVYLFVRGVRPDWRDAEGRPAGVYLDRPDAALIEDLSRLLDADGGP
A
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atgaacccgcagcgagacctcttcaccgagacgaccgagacgaacgagacgaccgaaccc
atcgaagcgcgcgacaccatgccggcaacgacgccagcggccgaacgcgaagacgccctg
cgcccgctcgacgtcttccactgcccgctcgacggactgcgattgatcgaggcctcggcc
ggcaccggcaagacctggaacatctgcggcttgtacctgaggctgctgctggaacgaggg
ctcgacgtctcgcaagtgctcgtcgtcaccttcaccaacgccgccacggccgagctgcgg
gagcgcatccgccagcgtctgctggacacctggctgcacgtgcagggccgtggcccggcc
acggccgacaccttcgtgccgcggctgctcgacgcgctgcgcggtcgagggctgcccgac
gaggtgctcgccaagaggctgcaatgggccctggcgggattcgacgaggcggcgatcttc
acgatccacggcttttgtcagcgggcactggccgacacgcccttcacggcgcgcgtgccg
atgcgcgccgagctgctccaggacgaccgcgagttgctgctcgaagccgtgcaggacttc
tggcggctgcgcgtcgaagacctgccacccgcgctcgcggcctacctgctcacccgcggg
gacagcccggcgcgctgggccgcactgctcaagcgtcacctcgccaagccgctggccgag
gtgcgctggcccgagggcctggaagaagcgcaggagctcgacgtggccgagctggagcgc
acgcatgccgtcgctcgccaggcctggggcgcggctcgcgaggaggtggtccgcctgctc
gaggcggcccgcccgcggctgcatgcgacgcactacaagccgcaggccctcgcgcgggcc
attgcctcttgggacggctggatggcgtgcgaaagcgcgaccgccgggttggacgaggac
tttcccaagctcgagctgctgaccgcggcgaagctgagggcctgcaccaaggcccggcag
acgacgccggagcaccccttcttcgacgtggccgaggccgcccatggggcgctggtgcgc
gccgagtcggcgctcgcctacgcgcgagtcgccctgctgcgggagatgatcggtcattgc
accgagaccctgaaggcgctcaagcgcagacgacgcgtgatcgcgttcgacgacatgctc
tccaacctgcatgcgcggctgcacggccccgacgggccggtcctcgcctcgacgctgcgg
gcacgctttccggctgcgctgatcgacgagttccaggacaccgacccgctgcagttcgcc
atcttccacaggctctatgccacgccgcagcgtccgccgctctttctcgtcggcgacccg
aagcaggcgatctaccgcttccgcaacgccgacctgcacacctacctcgcggcccggcgg
cacgcggacgcgcagtacacgctcgaggccaaccaacggtcgagcgggccgctcgtgcgc
gcgctcaacgcgctgttcggtgagaatccgcgcctcttcatgctcgaggggctgcgctac
cacccggtgaccgtgggcgacaagccgcgcccggcccttcacgatggcgggccggcacgt
gcgccgttgcaggtgtggtggctgccgcaccaggaagacggcagcctgctcgaatggcgc
gccgcggaacggctcgtgacgcagcgcgtcgcggccgagattgcgcgccttctcgccagt
gcccgccgcggcgaggtgcgcatcggcgaaaggccgctcggcgcgggcgacatcgccgtg
ctggtgcgctcgcacgccgaaggcagccgcatgcgccgggcgctggccgcgctgggcgtg
ggcagcgtggagctctcgcagtccagcgtgttcgccagcgccgaggcggaggagctcgat
gccctgctcggggcgatgctcgagccgggacgcgaaggccggctcaaggcggcgctcgcc
accaccctgatgggccgcgacgccggtgcactcgacgcgctggcgaacgacgaggaggcg
atgatcgagcaggtgcagcgcttcgaggactaccggcgcgcctggttggcacgcggggtc
gggccgatgctgcgcgaatggatggcccgcgaaggcgtggccgaacggctgctcggctgc
cccgacggcgagcgccgcatgaccaacctgctgcacctcatcgaatgcctgcagcaggcg
agcagccaacacccgaaccccgatgcgctgctgcgctggctgcaggtgcagcgccacgac
ccccgcccggacgaggccacgcagctgcggctggagtcggaccggcacctggtgcagatc
gtcacgatccaccgctccaagggcctggagtacggcatcgtgttctgccccttcctctgg
aggtcccgccgcgcgccctccgcctcgggcgacgctgtcgagtaccacgagcagggccgc
accgtcatcgactaccgcaaggacctggacccggccttcgacgatcaggccatccggcgc
atccagcggctggaagacgcctccgagttcctgcgcctgctgtatgtggcgctcacgcgc
gccgtgcaccgatgcgtgctggtggcaggctgctacctggcacacagcgggccagccctg
aagcccaccgagagcgcgcgcggcctgctcaactgggtggtggccggcgccggcctcagc
cctgaggaatggatggacggcgagcgcgagatcggctccatccgcaccgactgggaggag
tgggcgcgccgggccgcgccgcatgtcagcttcgaggtgctgcctgccatcacggccgag
cccctgccagcggaggccgccgaaccggccgcgatcgcggcgctgcctgcgccggggcac
ctgccctcgccgtggtggatcggcagctacagcgcgctcgtgcacggcgcagcgcacgag
gcagcggcgctcgagcgcgaccagcgcaccgccgacgacgagggcgtggacgccgccagc
gagccggccgtcgaactcgacgaggacgacccgctgcgctttccccgcggtgcggccgcc
ggggagtgcatgcacaccgtcttcgagctcgccgacttcgcggaccgcggcacctgggcg
agcgccatcgccaccggcttgcgccgcctgcgcggtgccgagccccacggcgaagaaccc
gctgccgccgcgcagacgcgcatgctcgagcgactgctcgcccaggtgttgcacagcgag
ttgccgctcggcccacgtgcgctgcggctggcggacctgtcggccggctcccgcgtgcac
gagatggagttctatctgcctgcgccacgcctggagccggctcgcctgcaacgccggctg
caggcggccggctatgcggtgccggccctgagcgcgcatgccttgcagggctacctgcgc
ggcttcatcgacatggtgttcgaacacgaggggcgctactacgtgctcgactggaaatcc
aaccacctgggcgagtcgccctccgcctacgggcgcgaccgcctggccgccgtgatggct
cgcgagggctaccacctgcaggccctgctgtacctggtggcgctgcaccgtcacctcgcg
ctgcgcctgcccggctacgacgcgcagcagcatctgggcggcgcggtgtacctcttcgtg
cgcggtgtgcggcccgactggcgcgacgccgagggtcgccccgccggcgtgtacctcgac
cggcccgacgccgcgctgatcgaagacctgtcgcggctgctggacgcagacggagggccg
gcatga
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