KEGG   Caldimonas aquatica: OMP39_03175
Entry
OMP39_03175       CDS       T08587                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
saqa  Caldimonas aquatica
Pathway
saqa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:saqa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OMP39_03175
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:saqa03019]
    OMP39_03175
Enzymes [BR:saqa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     OMP39_03175
Messenger RNA biogenesis [BR:saqa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     OMP39_03175
SSDB
Motif
Pfam: DEAD Helicase_C ResIII ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: UZD55606
UniProt: A0ABY6MUC8
LinkDB
Position
699350..700783
AA seq 477 aa
MTEPTVAAEAGGLFSSLPLAESLRRAVADQGYATMTPIQAKAIPVVLSGRDVMGAAQTGT
GKTAAFSLPLLQKLLKHENTSASPARHPVRALVLAPTRELADQVAVNVKAYAKYTQLRVA
CVYGGVDMNPQTQELRRGVEVLIATPGRLLDHIQAKNCNLGQVEYVVLDEADRMLDIGFL
PDLQRILSYLPKQRQTLLFSATFSPEIKKLAQSYLQDPVLVEVARPNATAATIEQRFFAV
EDDDKRRAVRHLLRERGLSQAIVFVNSKLGAARLARSLEREGLKTAALHGDKSQDERLKA
LEAFKRNEVQLLVATDVAARGLDIADLPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAMS
FVSRSDQRLVAEIEKLIKKKIEVEPLELEEDERPRRPLRRDDDEERPARAAASRGPRSQP
AVPRDPLFDQPYEEKPGAAPTWEKQPKPEPSLRPLSPYIKPKRKVAALLGGGKKAAG
NT seq 1434 nt   +upstreamnt  +downstreamnt
atgaccgaacctaccgtggccgccgaagcgggcggcctgttctcctccctgccgctggcg
gagtcgctgcggcgcgccgtcgccgaccagggctacgccaccatgacgccgatccaggcc
aaggcgatccctgtggtgctctcggggcgcgacgtgatgggcgccgcgcagaccggcacg
ggcaagacggcggccttctcgctgccgctgctgcaaaagctgctcaagcacgagaacacc
agcgcctcgcccgcgcgccatccggtgcgcgcgctggtgctggcgcccacgcgcgagctg
gccgaccaggtggccgtcaacgtgaaggcctacgccaagtacacgcagttgcgcgtggcc
tgcgtctacggcggcgtggacatgaacccgcagacgcaggagctgcgccgtggcgtcgag
gtgttgatcgccacccccgggcggttgctggaccacatccaagccaagaactgcaacctg
ggccaggtcgagtacgtggtgctggacgaggccgaccggatgctggacatcggcttcctg
ccggacctgcagcgcatcctgagctacctgcccaagcagcggcagacgctgctgttctcg
gccaccttctcgcccgagatcaagaagctcgcgcagagttacctgcaggacccggtgctg
gtggaagtggcccggcccaacgcgacggcggccaccatcgagcagcgcttcttcgccgtc
gaggacgacgacaagcggcgcgccgtgcggcacctgctgcgcgagcgcggcctctcgcag
gccatcgtgttcgtcaactccaagctgggggcggcgcggctggcacgctcgctggagcgt
gaaggtctcaagaccgcggcgttgcacggcgacaagtcgcaagacgagcgcctgaaggcg
ctggaggccttcaagcgcaacgaggtgcagttgctggtggccaccgacgtggccgcgcgc
gggctggacatcgcggacctgccggcggtgttcaacttcgacatcccgttcaacgccgaa
gactacgtgcatcgcatcggccgcaccggccgcgcgggcgcttcgggcctggcgatgtcg
ttcgtcagccgcagcgatcagcgcctggtggccgagatcgaaaagctcatcaagaagaag
atcgaggtcgagccgctggagctggaagaagacgagcgcccccggcgcccgctgcgccgc
gacgacgacgaggagcgcccggcacgggcagccgcgagccgcggcccacgctcccagccg
gcggtcccgcgcgatcccctgttcgaccagccctacgaggaaaagccgggcgccgcgccc
acttgggagaagcagcccaagcccgagccctcgttgcggccgctgtcgccctacatcaag
cccaaacgcaaggtggcggccctgctgggcggcggcaagaaggcggcgggctga

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