Caldimonas aquatica: OMP39_04605
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Entry
OMP39_04605 CDS
T08587
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
saqa
Caldimonas aquatica
Brite
KEGG Orthology (KO) [BR:
saqa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saqa03032
]
OMP39_04605
03400 DNA repair and recombination proteins [BR:
saqa03400
]
OMP39_04605
Enzymes [BR:
saqa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
OMP39_04605
DNA replication proteins [BR:
saqa03032
]
Prokaryotic type
DNA Topoisomerases
OMP39_04605
DNA repair and recombination proteins [BR:
saqa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OMP39_04605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Secretin_N
Motif
Other DBs
NCBI-ProteinID:
UZD55865
LinkDB
All DBs
Position
complement(1018412..1019521)
Genome browser
AA seq
369 aa
AA seq
DB search
MNGALQEAQPTASPRPGTAVRVDRRLSRALKELLDQPPPKLVYVNDTMPGYRRVRRGDAF
EYLDTEGRPLRDEAALRRIRSLAIPPAYTDVWICPRADGHLQATGRDARGRKQYRYHPYW
QVLRDCDKFDRMLAFGEALPRIRARVRRHLALRGLPREKVLAALVQLLDTTFIRVGNDEY
ARENGSFGLTTLRTRHAAVRGDTLRLKFKGKSGVLHDIAVTDRQLARIVRRCQELPGQDL
FQYLDEAGEIRSVGSTDVNDYLRDIGGSDFTAKDFRTWHGSVQALEQLGSLTASSPTEAK
RMVKAALSQVAERLGNTVAVCRKSYVHPKIVEAFLEGKLQSPRAAGKAPRALTPAERRLM
AFLRAGSAA
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgaacggggcgctgcaggaagcgcagcccacggcgagcccgcgacccggcacggccgtg
cgggtcgaccggcgcctgtcgcgggccctcaaagagctcctggaccagccccctccgaaa
ctcgtctacgtcaacgacaccatgcccggctaccgccgcgtacgccggggcgacgcgttc
gagtacctggacaccgaaggccggcccctgcgcgacgaagccgcactgcgccgcatccgc
agcctggccatcccgccggcttacaccgacgtgtggatctgcccgcgcgccgacgggcac
ttgcaggccaccggacgcgacgcgcgcgggcgcaagcagtaccgataccacccgtactgg
caggtcctgcgcgactgcgacaagttcgaccggatgctggcgttcggcgaggccctgccg
cgcatccgggcccgggtgcgccggcatctcgccttgcgcgggctgccgcgcgagaaggta
ctggcagcactggtgcagctgctggacacgaccttcatccgcgtcggcaacgacgagtac
gcccgcgagaacggctccttcggcctgaccacgctgcgcacgcggcacgcggcggtgcgc
ggtgacaccttgcgcctcaagttcaagggcaagagcggcgtgttgcacgacatcgccgtc
accgaccgccagctcgcacgcatcgtgcggcgctgccaggagctgccgggacaggacctc
ttccagtacctcgacgaggccggcgagatccgctcggtcggctccaccgacgtgaacgac
tacctgcgtgacatcggcggcagcgacttcacggcgaaggatttccgcacctggcacggc
agcgtgcaggccttggagcaactgggctcgctcaccgcctccagccccaccgaagccaag
cggatggtcaaggcggcgctctcgcaggtggccgagcgcctgggcaacaccgtggcggta
tgccgcaagtcctacgtccacccgaagatcgtggaggccttcctcgaaggcaagctgcaa
tcgccccgagcggccgggaaggctccgcgcgcactcacgccggcggagcgccggctcatg
gccttcctgcgcgccggaagcgctgcctga
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