Caldimonas aquatica: OMP39_05765
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Entry
OMP39_05765 CDS
T08587
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
saqa
Caldimonas aquatica
Pathway
saqa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saqa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OMP39_05765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saqa03019
]
OMP39_05765
Enzymes [BR:
saqa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OMP39_05765
Messenger RNA biogenesis [BR:
saqa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OMP39_05765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
P-loop_SecA
Utp25_C
Gag_p24
ChuX_HutX
SNF2-rel_dom
AAA_22
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-ProteinID:
UZD56082
LinkDB
All DBs
Position
complement(1266166..1267680)
Genome browser
AA seq
504 aa
AA seq
DB search
MTFAELGLAEPLVRAVREQGYETPTPIQRQAIPAVLAGGDLLAGARTGTGKTAGFTLPLL
HRLAAEKPVRDAKGRVAIRALILTPTRELAAQVEESVRTYGKYLPLKSMVMFGGVGMQPQ
IDALRRGVDILVATPGRLLDHHQQGTLDMRHVQYFVLDEADRMLDMGFIHDIRKILAIVP
PHKQSLLFSATFSDEIKALAERLLNKPQVIEVARRNTTAETVAQRVHPVDRDRKKELLAH
LIKRENWHQVLVFTRMKHGANRLVEFLQKEGITAMAIHGNKSQGARTRALAEFKSGELQV
LVATDIAARGIDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEEGFLH
DIEKLIKRQIPRETVPGFEPDPNAKPEPIKLGRMTLHGGLKREGARTAHEPRDRGGRAGR
SAPAPSRREGGAARAEPPRPSARNDGHGRPQGPRSHEPPPAGAGTRAAHAHGAARSSAPR
EPAPARPARSGQQAALTSVKPPRR
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgacgtttgcagaactcggcctcgccgagcccctcgtgcgtgccgtgcgtgagcaaggc
tacgaaacccccacccccattcagcgtcaggccatccccgccgtgctcgcaggcggcgac
ctcctggccggcgcccggaccggtaccggcaagacggcaggcttcacgctgccgctgctg
caccggctcgcggccgagaagccggtgcgcgacgccaagggccgcgtcgcgatccgcgca
ttgatcctcaccccgacgcgtgaactcgccgcgcaggtcgaggaaagcgtgcgcacctac
ggcaagtacctgcctctcaagagcatggtgatgttcggcggcgtcggcatgcagccgcag
atcgacgcactgcgccgtggcgtggacatcctggtggccacgcccggccgcctgctcgac
caccaccagcagggcacgctggacatgcgccacgtgcagtacttcgtgctggacgaggcc
gaccgcatgctcgacatgggcttcatccacgacatccgcaagatcctcgcgatcgtgccg
ccgcacaagcagagcctgctgttctcggccacgttctccgacgagatcaaggcgctggcc
gagcggctgctcaacaagccgcaggtgatcgaggtggcccgccgcaacacgaccgccgag
acggtcgcgcaaagggtccacccggtggaccgcgaccgcaagaaggagttgctcgcccac
ctcatcaagcgcgagaactggcaccaggtgctggtgttcacgcgcatgaagcacggcgcc
aaccggctggtcgagttcctgcagaaggaaggcatcaccgcgatggccatccacggcaac
aagagccaaggggcccgcacgcgcgccctggctgagttcaagagcggagagttgcaggtg
ctggtggcgaccgacattgccgcgcgcggcatcgacatcgaccaactgccgcacgtggtg
aacttcgagctgcccaacgtgccggaagactacgtgcaccgcatcggccgcaccggccgc
gcgggggcccagggagaggcgatctcgctcgtctgcgtggacgaggaaggctttctgcac
gacatcgagaagctcatcaagcgccagattccacgcgagacggtgcccggattcgagccc
gacccgaacgccaagcccgagccgatcaagctgggccgcatgactttgcacggcggcctc
aagcgtgagggtgcccgcaccgcgcacgagccgcgcgaccgtggcggccgcgcaggccgc
agcgctcccgcccccagccgacgcgaaggaggcgctgcgcgcgccgagccgccccggccg
tcggcccgcaacgacggccacgggcgcccgcagggcccgcgctcccacgagccgcccccc
gcaggggccggcacgcgggcggcgcatgctcacggggctgcgcgaagcagcgccccccgg
gagccggcgccggcccgcccggcccgcagcggccagcaagccgccttgacgagcgtcaag
ccgccgcgccgttga
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