Caldimonas aquatica: OMP39_06250
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Entry
OMP39_06250 CDS
T08587
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
saqa
Caldimonas aquatica
Pathway
saqa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
saqa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OMP39_06250 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saqa03400
]
OMP39_06250 (uvrB)
DNA repair and recombination proteins [BR:
saqa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OMP39_06250 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OMP39_06250 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_16
Kinesin
DUF87
AAA_22
FlaG
Motif
Other DBs
NCBI-ProteinID:
UZD56171
UniProt:
A0ABY6MVY7
LinkDB
All DBs
Position
1371121..1373211
Genome browser
AA seq
696 aa
AA seq
DB search
MAETLHEIPPLDDSKFVRFPDSPFQLYQPYPPAGDQPSAIEQLVEGVRDGLAYQTLLGVT
GSGKTYTMANVIARLGRPAIVFAPNKTLAAQLYSEFREFFPKNAVEYFVSYYDYYQPEAY
VPQRDLYIEKDSSINEHIEQMRLSATKSILERRDVVVVATVSAIYGIGKPEDYTQMRLIM
RVGDTIGQRDLIAQLIRMQYTRNEIDFGRGTFRVRGDTIDIFPAEHSELAIRVELFDDEI
ESLALLDPLTGRIRQKVPRFVVYPSSHYVTPREQVLRAIEGIKQELRERLDELVKAGKLV
EAQRLEQRTRFDLEMLQEIGHCKGIENYTRHLSGARPGEPPPTLVDYLPPDALMFLDESH
VLIGQLGGMYNGDRARKTTLVEYGFRLPSALDNRPLKFEEFERKMRQAIFVSATPGDYEQ
RTAGQVVEQVVRPTGLVDPIVEVRPAATQVDDVLQEIHERVKANERVLITTLTKRMAEQL
TDYLADNGVKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILD
ADKEGFLRAERSLIQTIGRAARNANGKAILYADTVTDSMRRAIGETERRRAKQLAYNEAH
GITPRTVKKQVRELIDGVFAAQESKQDFKAAQEAAKVEALSEKDLGKRIKQLEKQMLEYA
RNLEFEKAARVRDQLALLKEQAFGAPGSDHIAPMGS
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggccgagacgttgcacgagattccaccgctggacgactccaagttcgtccggttcccc
gattcgccgttccagctctatcagccgtacccgcccgccggcgaccagccgagcgcgatc
gagcagctggtcgaaggtgtgcgcgacgggctcgcctatcagaccctgctgggggtgacc
ggctcgggcaagacgtacaccatggccaacgtgatcgcccgcctgggacggccggcgatc
gtgttcgcgcccaacaagacgctggccgcgcagctgtacagcgagttccgggagttcttc
ccgaagaatgcggtggagtacttcgtcagctactacgactactaccagcccgaggcctac
gtcccccagcgcgacctctacatcgagaaggacagctccatcaacgagcacatcgagcag
atgcgcctgtcggccaccaagagcatcctggagcggcgcgacgtggtggtcgtggccacc
gtctcggccatctacggcatcggcaagcccgaggactacacgcagatgcggctcatcatg
cgcgtgggcgacacgatcggccagcgcgacctcatcgcgcagttgatccgcatgcagtac
acgcgcaacgagatcgacttcgggcggggcaccttccgggtgcgcggcgacacgatcgac
atcttcccggccgagcactcggagctggccatccgtgtggagctcttcgacgacgagatc
gagtcgctggcgctgctggacccgctgaccgggcgcatccgccagaaggtgccgcgcttc
gtcgtgtatccctccagccactacgtgacgccgcgcgagcaggtgctgcgcgccatcgaa
ggcatcaagcaggagctgcgcgagcgcctggacgagctggtcaaggccggcaagctggtc
gaggcgcaacgcctggagcaacgcacccgtttcgacctggagatgctgcaggagatcggc
cactgcaaggggatcgagaactacacccgccacctctccggtgcccgccccggggagccg
ccgccgacactcgtggactacctgccccccgacgcgctgatgttcctcgacgagagccac
gtgctgatcggtcagctgggcggcatgtacaacggcgaccgcgcgcgcaagacgacgctg
gtcgagtacggcttccggctgccctcggcgctcgacaaccggccgctcaagttcgaggag
ttcgagcgcaagatgcgccaagcgatcttcgtctcggccaccccgggcgactacgagcag
cgcactgcggggcaggtggtggagcaggtggtgcgccccaccggcctggtggacccgatc
gtcgaggtgcggccggccgccacacaggtggacgacgtgctgcaggagatccacgaacgg
gtgaaagcgaacgagcgcgtgctgatcacgacgctcaccaagcgcatggccgagcagctc
accgactacctggccgacaacggcgtcaaggtgcgctacctgcactcggacatcgacacc
gtcgagcgggtggagatcatccgcgacctgcggctcggcaccttcgacgtgctggtgggc
atcaacttgctgcgcgaaggcctggacattcccgaggtgtcgctggtggccatcctggat
gccgacaaggaagggttcctgcgcgccgaacgcagcctgatccagaccatcggccgcgcg
gcgcgcaatgccaacggcaaggccatcctctacgccgacaccgtcaccgactcgatgcgt
cgcgccatcggcgaaaccgagcgccgacgggccaagcagctcgcctacaacgaagcccac
ggcatcacgccgcgtaccgtcaagaagcaggtgcgcgagctgatcgacggggtcttcgcg
gcgcaggaatccaaacaggacttcaaagccgcgcaggaggcggccaaggtcgaagccctg
tccgagaaggatctgggcaagcgcatcaagcagttggaaaagcagatgctcgagtacgcg
cgcaacctcgaattcgagaaggcggcccgcgtgcgggaccagctggcgctgctcaaggag
caggccttcggcgccccgggcagcgaccatatcgcacctatgggctcgtga
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integrated database retrieval system
