Caldimonas aquatica: OMP39_06730
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Entry
OMP39_06730 CDS
T08587
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
saqa
Caldimonas aquatica
Brite
KEGG Orthology (KO) [BR:
saqa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
saqa03009
]
OMP39_06730 (rlmD)
Enzymes [BR:
saqa01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
OMP39_06730 (rlmD)
Ribosome biogenesis [BR:
saqa03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
OMP39_06730 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
TRM5-TYW2_MTfase
Methyltransf_ANTKMT
Methyltransf_25
RrnaAD
Methyltrans_SAM
Cons_hypoth95
Methyltransf_32
MTS
Methyltransf_11
Methyltransf_15
Methyltransf_23
TPMT
PrmA
Motif
Other DBs
NCBI-ProteinID:
UZD56259
UniProt:
A0ABY6MWA7
LinkDB
All DBs
Position
1499398..1500762
Genome browser
AA seq
454 aa
AA seq
DB search
MTQANEWLKVESLDLEAQGVAHDAEGKVVFIEGALPGEEVQVAVTRRKNNWEQARVVALR
KESSQRVVPRCVHFGVCGGCKMQHFHISAQVAVKQRVLEDNLWHLGKVRPETILRPIEGP
TWGYRFRARLSVRMVPKKGGVLVGFHERKSSYVADMTSCQVLPPHVSAMLVPLRHLISSM
DRPDRLPQIEVAVGEHDEGRATALVLRHLEPLSEADIARLRRFAEEHGVQWWLQPKGPDS
IHRLDEGGPVLAYSLPEFDVRMPFRPTDFTQVNHHINRMLVGRAVRLLDPQPHERVIDWF
CGLGNFTLPIARRARQVLGVEGSEALVQRSQDNARLNRLEARTSFEARNLFELEPQDLLR
YGSADKWLVDPPREGAFALAKALADVHQQGGLSGGLSGWQAPRRIVYVSCNPATLARDAG
LLVHQAGYTCVAAGAVNMFPHTAHVESIAVFERR
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgacacaagcgaatgagtggctgaaggtcgagtcgctcgacctcgaggcccagggcgtg
gctcacgacgcggaaggcaaggtcgtcttcatcgagggcgcccttccgggcgaagaagtg
caggtcgccgtcacgcggcgcaagaacaactgggagcaggcgcgcgtggtcgcgctgcgc
aaggagagctcgcagcgtgtggtgccgcgctgcgtccacttcggcgtgtgcggcggctgc
aagatgcagcatttccacatctcggcgcaggtggccgtgaagcagcgcgtgctcgaggac
aacctctggcacctcggcaaggtgcggcccgagacgatattgcggccgatcgaggggccg
acctggggctaccgctttcgcgcgcggctgtcggtgcgcatggtgccgaagaagggcggc
gtgctggtcggttttcatgagcgcaagtcgagctacgtggccgacatgacgagctgccag
gtgctgccgccgcacgtgagcgcgatgctggtgccgctgcgtcacctcatctcgtcgatg
gaccggcccgatcgcctgccgcagatcgaggtggccgtgggcgagcatgacgagggccgg
gcgacggcgctcgtgctgcggcatctggagccgctgagcgaggccgatatcgcccgcctg
cgcaggtttgccgaggaacatggggtgcagtggtggctgcaaccgaaggggcccgattcg
atccatcggctcgacgaaggcggtccggtgctggcgtattcgctgcccgagttcgacgtg
cgcatgccgttccggccgacggacttcacgcaggtcaaccatcacatcaaccggatgctc
gtcgggcgcgccgtgcgcctgctcgacccgcagccgcatgagcgggtgatcgactggttc
tgcggcctgggcaacttcacgctgccgatcgcgcggcgagcacggcaggtgctgggtgtg
gaaggcagcgaggcgctggtgcagcgctcgcaggacaacgcgcgcctcaaccggctggaa
gcgcgtacctccttcgaggcgcgcaacctcttcgagctggagccgcaggatctgctgcgc
tatggcagcgctgacaagtggctggtcgatccgcccagggagggggcgttcgcactggcc
aaggcgctggccgacgtgcaccagcaagggggcctgagtgggggcctgagcggctggcag
gcgccccggcgcatcgtgtacgtgtcgtgcaacccggcgacgctggcgcgcgacgcgggg
ctgctggtgcatcaggctggctacacctgtgtcgcggccggtgccgtgaacatgttcccg
cacaccgcgcacgtcgagagcatcgccgtcttcgagcggcggtga
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