Caldimonas aquatica: OMP39_08895
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Entry
OMP39_08895 CDS
T08587
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
saqa
Caldimonas aquatica
Pathway
saqa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saqa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OMP39_08895 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saqa03021
]
OMP39_08895 (rho)
03019 Messenger RNA biogenesis [BR:
saqa03019
]
OMP39_08895 (rho)
Transcription machinery [BR:
saqa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OMP39_08895 (rho)
Messenger RNA biogenesis [BR:
saqa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OMP39_08895 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA
AAA_22
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
UZD53811
UniProt:
A0ABY6MPD0
LinkDB
All DBs
Position
1971697..1972959
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AA seq
420 aa
AA seq
DB search
MHLSELKVLHVSELIKMAESLEIENTSRMRKQELMFAIMKRRAKQGEQIFGDGVLEVLPD
GFGFLRSPETSYLASTDDIYLSPSQIRRFNLHTGDAIEGEVRVPKDGERYFALVKVDRVN
GLTPEENKHKIMFENLTPLFPKEQFKLEREIRSEENITGRIIDLIAPIGKGQRALLVAPP
KSGKTVMMQHLAHAIIANHPEVYLIVLLVDERPEEVTEMQRTVRGEVISSTFDEPAARHV
QVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVLPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALIDTGSRMDEVIYEEFKGTGNCEIHLDRRMAEKRVYPSILL
NKSGTRREELLLKPEILQKTWILRKLLYPMDEIEAMEFILDKMKSTKNNQEFFEMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatctttccgaactgaaggtccttcacgtctccgagctcatcaagatggccgagtcg
ctggagatcgagaacaccagccgcatgcgcaagcaggagctgatgttcgcgatcatgaag
cggcgcgccaagcaaggcgagcagatcttcggcgacggcgtgctggaggtgctgcctgac
ggcttcggcttcctgcgctcgcccgagaccagctacctcgcgagcaccgacgacatctac
ctgtcgcccagccagatccgccgcttcaacctccacaccggcgacgccatcgaaggcgaa
gtgcgggtgcccaaggacggcgagcggtacttcgcgctcgtcaaggtcgaccgggtcaac
ggcctgactccggaggagaacaagcacaagatcatgttcgagaacttgacgccgctcttt
ccgaaagagcagttcaagctcgaacgcgagatccggtcggaggagaacatcaccggccgc
atcatcgacctgatcgcccccatcggcaaaggccagcgcgcgctgctcgtcgccccgccc
aagagcggcaagacggtgatgatgcagcacctggcccacgcgatcatcgccaaccacccg
gaggtctacctcatcgtgctgctcgtcgacgagcgccccgaggaagtgaccgagatgcag
cgcaccgtgcgcggcgaggtgatcagctccaccttcgacgagccggccgcgcgccacgtg
caggtggccgagatggtgatcgagcgcgccaagcgcctggtcgagctgaagaaggacgtg
gtgatcctgctcgactccatcacccggctggcccgtgcctacaacaacgtgctgccctcc
tccggcaaggtgctgacgggcggtgtggacgccaacgccctgcagcggcccaagcgcttc
ttcggtgcggcccgcaacatcgaggaaggcggctcgctcaccatcatcggcaccgccctg
atcgacacgggcagccgcatggacgaggtgatctatgaggaattcaagggcaccggcaac
tgcgagatccacctggaccgccgcatggccgaaaagcgggtgtacccctcgatcctgctg
aacaagtcgggcacccgccgcgaagaactgctgctcaagcccgagatcctgcagaagacc
tggatcctgcgcaagctgctctaccccatggacgagatcgaggcgatggagttcatcctc
gacaagatgaagtctacgaagaacaaccaggagttcttcgagatgatgcgccgcggcggc
tga
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