Caldimonas aquatica: OMP39_10800
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Entry
OMP39_10800 CDS
T08587
Symbol
orn
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
saqa
Caldimonas aquatica
Pathway
saqa03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
saqa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
OMP39_10800 (orn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saqa03019
]
OMP39_10800 (orn)
03009 Ribosome biogenesis [BR:
saqa03009
]
OMP39_10800 (orn)
Messenger RNA biogenesis [BR:
saqa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OMP39_10800 (orn)
Ribosome biogenesis [BR:
saqa03009
]
Eukaryotic type
Pre-60S particles
RNases
OMP39_10800 (orn)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
pP_pnuc_1
CTD1
Motif
Other DBs
NCBI-ProteinID:
UZD54161
UniProt:
A0ABY6MNT6
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All DBs
Position
complement(2374924..2375532)
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AA seq
202 aa
AA seq
DB search
MTDLTPVPSAEAGGDGAIPAALPYSDQNLIWIDLEMTGLDPLRDRIIEIAVVVTDAQLAT
RIEGPVFAIHQSDEVLDAMDAWNKGTHGRSGLVDRVKASRISEAEAEEQVIDFLRRFVPK
NASPMCGNSICQDRRFLANYMPRLEAFFHYRNLDVSTLKELAKRWKPDVAASFKKAQKHT
ALADIHESIDELVHYREQFLQR
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
atgacagacctgacccccgtgccgtctgccgaggcgggcggcgacggcgccattcccgca
gcactgccctattcggaccagaacctcatctggatcgacctggagatgaccgggctcgac
ccgctgcgcgaccgcatcatcgagatcgccgtggtcgtgaccgacgcgcagctggccacg
cgcatcgagggaccggtgttcgcgatccatcagagtgacgaggtgctcgatgcgatggac
gcgtggaacaagggcacgcacggccgctccggcctggtcgaccgggtcaaggccagccgc
atctcggaggccgaggccgaggagcaggtcatcgacttcctccggcgcttcgtgcccaag
aacgcctcgccgatgtgcggcaactccatctgccaggaccggcgcttcctggcgaactac
atgccgcgactggaggccttcttccattaccgcaacctggatgtgagcacgctgaaggaa
ctggccaagcgctggaagccggacgtcgccgcttctttcaagaaggcgcagaagcacacc
gcattggccgacattcacgagtcgatcgatgagttggtccactaccgggagcagttcctc
caacgctga
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