Caldimonas aquatica: OMP39_12275
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Entry
OMP39_12275 CDS
T08587
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
saqa
Caldimonas aquatica
Pathway
saqa02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
saqa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
OMP39_12275
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
saqa02022
]
OMP39_12275
02035 Bacterial motility proteins [BR:
saqa02035
]
OMP39_12275
Two-component system [BR:
saqa02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
OMP39_12275
Bacterial motility proteins [BR:
saqa02035
]
Pilus system
Twitching motility proteins
OMP39_12275
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
AAA_16
AAA
HTH_50
Peripla_BP_4
TIP49
AAA_7
Motif
Other DBs
NCBI-ProteinID:
UZD54434
UniProt:
A0ABY6MR08
LinkDB
All DBs
Position
complement(2700951..2702474)
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AA seq
507 aa
AA seq
DB search
MTSASHYSLLVVDDEPDLRTLYELTLLREGYDVETAASVEDAWARLRDRTYSAVISDMRL
PDGSGLDLLRRLEEAGRREKTIVITAFGSPENAVEALKAGAYDYLTKPVDLKQFRSVIAS
ALGRPNAGGGASAAPGSAAPGSAVRGAGRSAAPVVVLTGSSGALDRMAGQSAAMRQVRGL
IEKVARSMAPVLVSGESGTGKELVARAIHEGSARRAQPFIAVNCGAIPEQLLEAEFFGYR
KGAFTGAAEDREGFFQAARGGTLFLDEIGDLPLAMQSKLLRVIQERAVRPVGAVSEAPVD
VRIISATHKDLGAEVQAGRFRQDLYYRLNVIQIRVPSLRERLEDLPAICERVLERIAQDA
GVWPPPRLAPEALARLARYAFPGNVRELENLLHRAVALTDSEWIDESDLGLPDAVFADSL
AQELETPVTPAPATPPAPGEPPLPSDLAAYLDAVERDILIRALEKHRFNRTAAGASLGLS
LRQMRYRMARLGVMVAEHGVTVDPDEP
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgacatccgcctcccactacagcctcctggtcgtcgacgacgagccggacttgcgcacc
ctctacgagctcaccttgttgcgtgagggttacgacgtggagacggccgcctcggtggag
gacgcctgggcacgcttgcgcgatcgcacctacagcgcggtcatctccgacatgcggctg
cccgacggcagcgggctggatctgctgcgccggctggaggaggccgggcggcgcgagaag
accatcgtcatcacggccttcggttcgcccgaaaacgcggtcgaggccctcaaggcgggc
gcctacgactacctgaccaagccggtggacctcaagcaattccgctccgtcatcgcgtcg
gcattgggccgtccgaatgcggggggcggcgcgtcggcagcgccgggttctgccgcaccc
ggctccgcggtgcgtggggcgggccgatcggcggcgccggtggtcgttctcaccggcagc
agcggcgcactcgatcgcatggcagggcagtcggccgcgatgcggcaggtccgcggcctg
atcgaaaaggtggcgcgcagcatggccccggtgctggtgagcggcgagtcgggcaccggc
aaggagttggtcgcccgcgccatccacgagggcagtgcgcggcgggcgcagccgttcatc
gcggtcaactgcggggccatcccggagcagttgctggaggcggagttcttcggctatcgc
aagggagccttcaccggtgccgcagaagaccgcgaaggattcttccaggccgcgcgcggc
ggcacgctgttcctcgatgagatcggtgacttgccgctggccatgcagtccaagctgctg
cgcgtgatccaggagcgcgcggtgcgccccgtgggcgcggtgagcgaggcgccggtggac
gtgcgcatcatcagcgcgacgcacaaggacctcggcgcggaggtccaggccggtcgcttc
cggcaggacctctactaccgcctcaacgtcatccagatccgcgtgccgtcgctgcgcgag
cggctggaggacctgccggccatttgcgagcgggtgctcgaacgcatcgcgcaggacgcg
ggcgtctggcccccgccgcgcctcgcccccgaagcgctggcccgtctcgcgcgctacgcc
ttccccggcaacgtgcgcgaactggagaacctgctgcatcgcgcggtggccctgaccgac
agcgagtggatcgacgagagcgacttgggcctgcccgatgcggtgtttgccgactcgctc
gcgcaggagctcgagacgccggtcacgccggccccggccacgcccccggctcccggtgag
ccgccgctgcccagcgatctcgcggcctacctcgatgccgtcgaacgcgacatcctgatc
cgcgcgctggagaagcaccgcttcaaccgcaccgccgcgggcgcgagcttgggcctgtcg
ttgagacagatgcgctatcgcatggcgcgcctgggcgtgatggtcgccgagcacggcgtc
accgtggaccccgacgagccgtga
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