Caldimonas aquatica: OMP39_13395
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Entry
OMP39_13395 CDS
T08587
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
saqa
Caldimonas aquatica
Pathway
saqa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
saqa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OMP39_13395 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saqa03021
]
OMP39_13395 (rpoA)
03400 DNA repair and recombination proteins [BR:
saqa03400
]
OMP39_13395 (rpoA)
Enzymes [BR:
saqa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OMP39_13395 (rpoA)
Transcription machinery [BR:
saqa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OMP39_13395 (rpoA)
DNA repair and recombination proteins [BR:
saqa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OMP39_13395 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
UZD54638
LinkDB
All DBs
Position
complement(2927678..2928664)
Genome browser
AA seq
328 aa
AA seq
DB search
MQTNLLKPKAINVEPLGGHRAKVTLEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAG
VLHEYSMIDGVQEDVVHIMLNLKGVVFRLHNREEVTLVLRKEGEGPVTAGDIQTPHDVEI
INPEHVIAHLSQGGKLDMQIKVEKGRGYVPGNMRRFGDEPTKAIGRIVLDASFSPVKRVS
YTVESARVEQRTDLDKLVMEIETNGAISPEEAIRASAKILVEQLAVFAQLEGSEIAAFEQ
PAQRAQQFDPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTETELLKTPNLGRKSLN
EIKEVLASRGLTLGVRLENWPPSGLDKR
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacgaatttgctcaaacccaaagccatcaacgtggagccgctgggcggccaccgc
gcgaaggtgacgctggagcccttcgagcggggctacggccacacgctgggcaatgccctg
cgccgcgtgctgctgtcgtcgatggtgggttacgcgccgaccgaggtgacgatcgccggc
gtgctgcacgagtactccatgatcgatggcgtgcaggaagacgtcgtccacatcatgctc
aacctgaagggcgtggtgttccgcctgcacaaccgggaagaggtcaccctggtgctgcgc
aaggaaggcgagggcccggtgacggcgggtgacatccagacgccgcacgacgtcgagatc
atcaaccccgagcatgtgatcgcccacctgtcgcagggcggcaagctcgacatgcagatc
aaggtcgagaagggccgcggatacgttccgggcaacatgcgccgctttggcgatgagccg
accaaggcgatcggccgcatcgtgctggatgcgtcgttctcgcccgtcaaacgcgtgagc
tacaccgtcgagagcgctcgcgtggagcagcgcaccgacctggacaagctggtgatggag
atcgagaccaacggcgccatctcgcccgaggaagcgatccgggcgtcggccaagatcctg
gtggagcaactggccgtgttcgcccagctggaaggcagcgagatcgccgcgttcgagcag
ccggcccagcgcgcgcagcaattcgacccgatcctgctgcgcccggtggacgagctcgag
ctgaccgtgcgctcggccaactgcctgaaggccgagaacatctactacatcggcgacctg
atccagcgcaccgagaccgagctgctcaagaccccgaacctgggtcgcaagtctctcaac
gagatcaaggaagtgctggcttcgcgcggcctgacgctcggcgtgcggctcgagaactgg
ccgccgtccggcctggacaagcgctga
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integrated database retrieval system
