Caldimonas aquatica: OMP39_13625
Help
Entry
OMP39_13625 CDS
T08587
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
saqa
Caldimonas aquatica
Pathway
saqa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
saqa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OMP39_13625 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saqa03021
]
OMP39_13625 (rpoC)
03400 DNA repair and recombination proteins [BR:
saqa03400
]
OMP39_13625 (rpoC)
Enzymes [BR:
saqa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OMP39_13625 (rpoC)
Transcription machinery [BR:
saqa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OMP39_13625 (rpoC)
DNA repair and recombination proteins [BR:
saqa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OMP39_13625 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
UZD54684
UniProt:
A0ABY6MRQ1
LinkDB
All DBs
Position
complement(2963732..2967949)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKGLLDLFKQFTPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELSAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVVDPGMTPLKKFSIMSEDDYETKRREYGDEFVAMM
GAEGIKKLLEEMDIDAEIDKIRNDMTGSELKIKKNSKRLKVLEAFKKSGIKPQWMILEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLARLLELKAPEIIVRNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSKLEAMGIATTIKAAKKEVEAGTPVVWDILEEVIREHPVL
LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARV
LMLASNNVLFPANGEPSIVPSQDVVLGLYYATRERVNGKGEGMVFTDVAEVQRALDNGVV
ELTAKVSVRLTEWSKDKTTGELVPETKMVETTVGRALLSEILPKGLPFALINKALKKKEI
SKLINASFRRCGLKETVVFADKLLQAGFRLATKAGISIAIDDMLVPKEKHAIIERAEKEV
KEIEQQYVSGLVTAGERYNKVVDIWGKAGDEVGKVMMSQLAKEKVVDRHGKTVEQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFNSTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTEHGFAMRALVEGGEVIESLRDRILG
RVAATEVLHPETQEVIIPAGSMLDEDALDLIEQAGVDEVKVRTPLTCNTRYGLCAKCYGR
DLGRGGLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAATRAAVASSVEAKSDGLIGFN
TTMRYVTNGKGELVVISRSGEIIISDQHGRERERHKVPYGATLNVKADQAIKAGTVLANW
DPLTRPIITEFAGRAKFENVEEGVTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLV
DANGNEVKIPGTDHSVTIGFPVGALIQVRDGQDLAPGEVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGILAEMTGTVSFGKETKGKVRLQITDPDGNVWEELVPKDKNILVHEGQ
VVNKGELIVDGPADPQDILRLLGIEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVQIVNPGDSHYISGEQVERSELFDTNDKLRAEGKMPATYADVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAFHQARKAKEEMDEQERRA
IAMQEAEELAAVQLSQLGDDDTSAQ
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtctgctcgatcttttcaagcagttcacgccggacgaacacttcgacgcgatc
aagatcgggctcgcttcgcccgagaagatccggtcctggtccttcggcgaggtcaagaag
cccgagacgatcaactaccgcacgttcaagcccgagcgcgacggcctgttctgcgccaag
atcttcggcccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcctgaagcac
cgcggtgtgatctgcgagaagtgcggcgtggaagtcacccagaccaaggtgcgccgtgaa
cgcatgggccacatcgaactgtcggctccgtgcgcgcacatctggttcctcaagtcgctg
ccgtcgcgtctgggcctggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaggcctatgtcgtggtcgaccccggcatgacgcctctgaagaagttctcgatcatg
agcgaggacgactacgagaccaagcgccgcgagtacggcgacgagttcgtcgcgatgatg
ggcgccgagggcatcaagaagctgctcgaggagatggacatcgatgcggagatcgacaag
atccgcaacgacatgaccggctcggagctcaagatcaagaagaactcgaagcgcctgaag
gtgctggaggccttcaagaagtcgggcatcaagccgcagtggatgatcctcgaggtgctg
ccggtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttcgcgacc
tccgacctcaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctggcgcgcctg
ctggagctgaaggcgcccgagatcatcgtgcgcaatgaaaagcgcatgctgcaagaggcg
gtggactcgctgctggacaacggccgccgcggcaaggcgatgaccggcgccaacaagcgt
gcgctcaagtcgctggccgacatgatcaagggcaagagcggccgcttccgtcagaacctc
ttgggcaagcgcgtcgactactcgggccgctcggtcatcacggtgggcccgacgctcaag
ctgcaccagtgcggcctgcccaagctgatggcgctggagctgttcaagccgttcatcttc
agcaagctcgaggcgatgggcatcgccacgacgatcaaggcggcgaagaaggaagtcgag
gccggcacgccggtggtgtgggacatcctcgaagaggtgatccgcgagcatccggtgctg
ctgaaccgcgcaccgacgctgcaccgtctgggcatccaggcgttcgagccggtgctgatc
gaaggcaaggccatccagctgcacccgctggtgtgcgcggcgttcaacgccgacttcgac
ggcgaccagatggccgtgcacgtgccgctgtcgctcgaagcgcagatggaagcgcgcgtg
ctgatgctcgcgtcgaacaacgtgctgttcccggccaacggcgagccctccatcgtgccg
tcgcaggacgtggtgctgggcctgtactacgccacgcgtgagcgcgtcaacggcaagggc
gagggcatggtcttcaccgacgtggccgaggtgcagcgtgcgctggacaacggcgtggtc
gagctgaccgcgaaggtcagcgtgcgcctgaccgagtggagcaaggacaagaccaccggc
gaactggtgcccgagaccaagatggtcgagacgaccgtcggccgcgcgctgctgtcggag
atcctgcccaagggcctgcctttcgcgctcatcaacaaggcgctgaagaagaaggagatc
tccaagctcatcaatgcctccttccgccgttgcggcctgaaggagacggtggtgttcgcc
gacaagctgctgcaggccggcttccgcctggcgacgaaggccggcatctcgatcgccatc
gacgacatgctcgtgcccaaggagaagcacgccatcatcgagcgcgccgagaaggaagtg
aaggagatcgagcagcagtacgtctcgggtctcgtgaccgccggcgagcgctacaacaag
gtggtggacatctggggcaaggccggcgacgaggtgggcaaggtgatgatgagccagctc
gccaaggagaaggtggtcgaccgccacggcaagaccgtcgagcaggagtcgttcaactcc
atctacatgatggccgactccggtgcccggggttctgccgcccagatccgccagctcgcg
ggcatgcgggggctgatggccaagccggacggctcgatcatcgagacgccgatcacggcg
aacttccgcgaaggcctgaacgtgctgcagtacttcaactccacgcacggcgcccgcaag
ggtctggccgacacggcgttgaagacggcgaactcgggctacctgacccgccgcctggtg
gacgtgacgcaggacctggtggtcaccgaggacgattgcggcaccgagcacggcttcgcg
atgcgcgcgctggtcgagggcggtgaggtgatcgagtcgctgcgcgaccgcatcctgggc
cgcgtggcggcgaccgaggtgctgcaccccgagacgcaggaggtcatcatcccggccggc
tcgatgctggacgaggatgcgctcgatctcatcgagcaggccggcgtcgacgaggtgaag
gtgcgcacgccgctgacctgcaacacgcgctacggcctgtgcgccaagtgctacggccgc
gacctcggtcgcggtggcctggtcaacgtcggcgaggcggtgggtgtgatcgccgcccag
tcgatcggtgagccgggcacgcagctgacgatgcgcacgttccacatcggtggcgcggcg
acccgtgccgctgtggcctccagcgtcgaggcgaagtccgacggcctcatcggcttcaac
acgacgatgcgctacgtgaccaacggcaagggcgagctggtggtgatctcgcgttcgggc
gagatcatcatctccgaccagcacggccgcgagcgcgagcgccacaaggtgccgtacggc
gcgacgctgaacgtcaaggccgatcaggcgatcaaggccggcacggtgctggccaactgg
gacccgctgacccgtccgatcatcaccgaattcgccggccgcgcgaagttcgagaacgtc
gaggaaggcgtcaccgtcgccaagcaggtggacgaggtcaccggtctgtccacgctggtg
gtcatcgacccgaagcggcgcggcgcggccaaggtggtgcgtccgcaggtcaagctggtc
gatgccaacggcaacgaagtgaagatcccgggcacggaccactcggtgaccatcggcttc
ccggtgggcgcgctgatccaggtgcgcgatggccaggatctggccccgggcgaggtgctg
gcgcgcattccggtcgaaggccagaagacgcgcgacatcaccggcggtctgccccgtgtg
gcggagctcttcgaagcccgctcgccgaaggacaagggcatcctggccgagatgacgggt
accgtctcgttcggcaaggagaccaagggcaaggtgcgcctgcagatcaccgacccggac
ggcaacgtctgggaggagctcgtgccgaaggacaagaacatcctggtgcacgagggtcag
gtggtcaacaagggcgagctgatcgtcgacggcccggccgacccgcaggacatcctgcgt
ctgctgggcatcgaggaactggcgcgctacatcgtcgacgaggtgcaggacgtctatcgt
ctgcagggtgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgg
cgcgtgcagatcgtcaacccgggcgacagccactacatctcgggcgagcaggtcgagcgc
tcggagctgttcgacaccaacgacaagctgcgcgccgagggcaagatgcccgcgacctac
gccgacgtgctcctcggcatcacgaaggcctcgctgtccaccgactcgttcatctccgcg
gcctccttccaggagaccacccgcgtgctgaccgaggcggccatcatgggcaagcgcgac
gagctgcgtggcctgaaggagaacgtcatcgtcggtcgcctcatccccgccggtacgggc
ctcgcgttccaccaggcgcgcaaggccaaggaggagatggacgagcaggagcgccgtgcc
atcgcgatgcaggaggcggaagaactcgcagcggtgcaactctcgcagttgggcgacgac
gacacttctgctcagtga
DBGET
integrated database retrieval system
