KEGG   Caldimonas aquatica: OMP39_13630
Entry
OMP39_13630       CDS       T08587                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
saqa  Caldimonas aquatica
Pathway
saqa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:saqa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    OMP39_13630 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:saqa03021]
    OMP39_13630 (rpoB)
   03400 DNA repair and recombination proteins [BR:saqa03400]
    OMP39_13630 (rpoB)
Enzymes [BR:saqa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     OMP39_13630 (rpoB)
Transcription machinery [BR:saqa03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     OMP39_13630 (rpoB)
DNA repair and recombination proteins [BR:saqa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      OMP39_13630 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2
Other DBs
NCBI-ProteinID: UZD54685
UniProt: A0ABY6MRP2
LinkDB
Position
complement(2967963..2972084)
AA seq 1373 aa
MAQAKSYSYTERKRIRKSFGKRESVLEVPYLLSMQKDSYRAFLQQEVPPQKRKNEGLQAA
FLSTFPIVSHNGYVEMKFLEYNIAKPPFDVRECQQRGLTYAAAVRAKLQMIIYDREAAQA
KTVKEIKEQEVYMGEVPLMTDYGSFIVNGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLL
FSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPEQILAHFFVFDNFR
LMDSGAQMEFVPERLKGEVARFDITDKSGNVVVEKDKRITARHTRMLEQSGTQFITVPED
FLIGRVLAKNQIDPETGEIIAKANDELTETLLKKLRGAGIKEIQCIYTNELDQGPYISQT
LASDETADQLAARVAIYRMMRPGEPPTEDAVEALFNRLFYSADTYDLSRVGRMKFNARVG
RDTADGPMTLTNEDILDVVKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQYRSGLAR
IEKAVKERLGQAETEALMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRV
SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETP
YRRVVDGQVTDQIDYLSAIEEGKYVIAQANATLDKDGRLIDELVSAREKGESVLTSPDRI
QYMDVAPSQIVSVAASLVPFLEHDDANRALMGANMQRQAVPTLRPEKALVGTGIERVAAV
DSGTVVTAKRGGVVDYVDANRIVIRVNDNEAVAGEVGVDIYNLIKYQRSNQNTNIHQRPI
VKRGDAVAVGDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTS
IHIEELVVMARDTKLGPEEITRDIPNLSEHQLSRLDESGIVYIGAEVGPGDVLVGKVTPK
GETTLTPEEKLLRAIFGEKASDVKDTSLRVEQGTSGTVIDVQVFTREGIQRDKRAQQIID
DELKRFRLDLNDQLRIVEADAFDRIEKLLAGKVANGGPKKLAKGTVITKEYLADVDKYHW
FDIRPADEDIAQQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVK
RRLQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPCDIVLNPLGVPSRMNVGQVLEVHL
GWAAKGIGQRIGDMLQREARVAELRQFLDELYNRSGGKTESLEALSDDEVLEMARNLSEG
MPFATPVFDGASEDEIRAMLKLAYPDEIAKAKGLTESRTQATLYDGRTGDAFERPVTVGY
MHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQE
MLTVKSDDVNGRTKVYENIVKGEHAIDAGMPESFNVLVKEIRSLGIDIELERN
NT seq 4122 nt   +upstreamnt  +downstreamnt
atggcgcaagcaaaatcctacagctacaccgagcgcaagcgcatccgcaagagttttggc
aagcgtgaaagcgtgctcgaggttccttacctgctgtcgatgcagaaggactcctaccgg
gccttcttgcagcaggaggtgcctccgcagaagcgcaagaacgagggcctgcaagccgcg
ttcctgtccacgttcccgatcgtctcgcacaacgggtacgtggagatgaagttcctcgag
tacaacatcgccaagcctccgttcgacgtgcgcgagtgccagcagcggggcctgacctac
gctgcggccgttcgggcgaagctgcagatgatcatctacgaccgcgaggcggcgcaggcc
aagacggtcaaggagatcaaggagcaggaggtctacatgggcgaagtgccgctcatgacg
gactacggctccttcatcgtcaacggcaccgaacgcgtcatcgtctcccagctgcaccgc
tcgccgggcgtgttcttcgagcacgacaagggcaagacgcacagctcgggcaagctgctg
ttctccgcgcggatcatcccgtaccgcggctcctggctggacttcgagttcgacccgaag
gacatcctctacttccgcgtcgaccgccgtcgcaagatgccggtcacgatcctgctcaag
gccatcggcctcaatcccgagcagatcctggcgcacttcttcgtcttcgacaacttccgc
ctgatggattcgggcgcgcagatggaattcgttcctgagcgcctgaagggcgaggtggcg
cgcttcgacatcaccgacaagtcgggcaacgtcgtcgtcgagaaggacaagcgcatcacc
gcgcgccacacccggatgctggagcagtcgggcacgcagttcatcaccgtgccggaggac
ttcctgatcggccgcgtgctggcgaagaaccagatcgacccggagacgggcgagatcatc
gccaaggccaacgacgagctgaccgagacgctgctcaagaagctgcgcggcgccggcatc
aaagagatccagtgcatctacacgaacgagctggatcagggcccgtacatctcgcagacg
ctggccagcgacgagacggccgaccagctcgccgcgcgcgtggcgatctatcgcatgatg
cgccccggcgagccgccgacggaagatgccgtcgaggccctgttcaaccgtctgttctac
agcgccgacacctacgacctctcgcgcgtcggccgcatgaagttcaacgcgcgcgtcggc
cgcgacaccgcggacggtccgatgaccctgaccaacgaggacatcctcgacgtggtcaag
atcctggtggacctgcgtaacggccggggcgaggtcgacgacatcgaccacctcggcaac
cggcgcgtgcgctgcgtgggcgaactggccgagaaccagtaccgctcgggcctggcgcgc
atcgaaaaagcggtcaaggagcgtctcggccaagccgagacggaagcgctgatgccgcac
gacctgatcaactccaagccgatctccgcggcgctgaaagagttcttcggggcgagccag
ctcagccagttcatggaccagaccaacccgctgtcggagatcacgcacaagcggcgtgtg
tcggcgctgggcccgggcggtctgacgcgcgagcgcgcgggcttcgaggtgcgcgacgtg
cacccgacccactacggccgcgtgtgcccgatcgaaacgcccgaaggcccgaacatcggc
ctgatcaactcgctggccctgtacgcgcgcctgaacgagtacggcttcctggagacgccg
taccggcgcgtcgtggacggccaggtgaccgaccagatcgactacctgtcggccatcgag
gaaggcaagtacgtgatcgcgcaggccaacgcgacgctggacaaggacggtcgcctgatc
gacgaactggtgtccgcgcgtgagaagggcgagtcggtgctgacctcgccggaccgcatc
cagtacatggacgtggccccgtcgcagatcgtctcggtggcggcctcgctggtgcccttc
ctggagcacgacgacgcgaaccgcgcgctgatgggcgccaacatgcagcgccaggcggtg
ccgacgctgcggcccgagaaggccttggtcggtaccggcatcgagcgcgtggccgcggtg
gactcgggcaccgtcgtgacggccaagcgcggcggggtggtggactacgtcgatgccaac
cgcatcgtgatccgcgtcaacgacaacgaggcggtcgcgggcgaagtgggcgtggacatc
tacaacctcatcaagtaccagcgctccaaccagaacaccaacatccaccagcgcccgatc
gtcaagcgtggcgacgcggtggccgtgggtgacgtgatcgcggacggcgcctcgaccgac
ctgggcgaactcgcgctcggccagaacatgctggtcgcgttcatgccctggaacggctac
aacttcgaggactcgatcctgatcagcgagaaggtggtggccgacgaccgctacacctcg
atccacatcgaggaactggtggtgatggcgcgggacaccaagctgggtccggaagagatc
acgcgcgacatcccgaacctctcggagcaccagctctcgcgcctggacgagtccggcatc
gtctacatcggggccgaggtcggtcccggcgacgtgctggtcggcaaggtcacgcccaag
ggcgagaccacgctgacgccagaggagaagctgctgcgtgcgatcttcggcgagaaggcg
tccgacgtgaaggacacctcgctgcgcgtcgagcagggcaccagcggcacggtgatcgac
gtgcaggtcttcacgcgtgaaggcatccagcgcgacaagcgtgcccagcagatcatcgac
gacgagctcaagcgcttccgcctggatctgaacgaccagctgcgcatcgtcgaggccgac
gcgttcgaccggatcgagaagctgctcgccggcaaggtggccaacggcgggcccaagaag
ctcgccaagggcacggtgatcaccaaggagtacctggccgacgtcgacaagtaccactgg
ttcgacatccgcccggccgacgaggacatcgcccagcagctcgagagcatcaagaactcg
ctggagcagacccgccacagcttcgacctggccttcgaagagaagcgcaagaagctcact
caaggcgacgagctgccggccggcgtgctcaagatggtcaaggtgtacctggccgtcaag
cgccggctgcagcctggcgacaagatggccggccgtcacggcaacaagggcgtggtctcc
aagatcgtgccggtcgaggacatgccctacatggccgacggcacgccgtgcgacatcgtg
ctgaacccgctgggcgtgccctcgcgcatgaacgtgggccaggtgctcgaagtgcacctg
ggctgggcggccaagggcatcggccagcgcatcggcgacatgctgcagcgcgaggcccgc
gtcgcggagctgcgccagttcctggacgagctgtacaaccgctcgggcggcaagacggaa
agcctggaggcgctctcggacgacgaggtgctggagatggcgcgcaacctctccgagggc
atgcccttcgcgacgccggtgttcgacggggcctcggaagacgagatccgcgcgatgctc
aagctcgcctacccggacgagatcgccaaggccaagggcctgaccgaatcgcgcacccag
gcgacgctctacgacgggcgcaccggcgatgccttcgagcggccggtgaccgtgggctac
atgcacgtgctgaagctgcaccacctggtggacgacaagatgcacgcgcgctcgaccggc
ccgtactcgctggtgacgcagcagccgctgggcggcaaggcgcagttcggcggccagcgc
ttcggcgaaatggaagtctgggcgctggaggcctacggcgcggcctatgtgctgcaggaa
atgctgacggtgaagtccgacgacgtgaacggccgtaccaaggtgtacgagaacatcgtc
aagggcgagcatgcgatcgacgccggcatgccggagtcgttcaacgtgctggtcaaggaa
atccgttcgctcggtatcgatatcgagctcgagcgcaactaa

DBGET integrated database retrieval system