Caldimonas aquatica: OMP39_13815
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Entry
OMP39_13815 CDS
T08587
Name
(GenBank) IclR family transcriptional regulator
KO
K20539
IclR family transcriptional regulator, blcABC operon repressor
Organism
saqa
Caldimonas aquatica
Pathway
saqa02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
saqa00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
OMP39_13815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
saqa03000
]
OMP39_13815
Transcription factors [BR:
saqa03000
]
Prokaryotic type
Helix-turn-helix
IclR family
OMP39_13815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IclR_C
HTH_IclR
MarR_2
Dimerisation
DUF4423
MarR
HTH_20
HTH_27
Rrf2
Motif
Other DBs
NCBI-ProteinID:
UZD54718
LinkDB
All DBs
Position
complement(3005799..3006671)
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AA seq
290 aa
AA seq
DB search
MTSPAVATGHEAPSLRTVLTPTEAGGGSASALVPAVTRAFAVLELLAAEGEPASLSRIAS
SLALPKSSVHALCRTLAHLGYLRRFDDGSYFLGARVLELAHAFTSRTQVVDEFQRIWAER
GDPPEETIILSVLDGPDIVYVGARPGSHPLGLAFHVGMRLPAHLAATGKAMLAFHDPAEV
RARLPASLAPMVQGRGPVPIDEFLSEMADTRRRGYSIDDEGVREGIYCYGAPVLDAAGQP
VAGVGVCIPKPLLPSSGERLRGVVIHVATRLSERIGGPGVAAAAISGPKS
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgcccgcggtggccaccggccacgaagccccttcgctgcgcaccgtgctcacc
ccgaccgaggccgggggcggctcggcctcggccctcgtgcccgcggtcacgcgcgctttc
gcggtgctggagctgctggcggccgagggcgagccggcgagcctctcgcgcatcgcgtcg
tcgctggcgctgcccaagagcagcgtgcatgcactgtgccgcaccttggcgcaccttggc
tacctgcgtcgcttcgacgacggcagctacttcctcggggcccgggtgctcgagctcgcg
cacgccttcacctcgcgcacgcaggtggtggacgagttccagcgcatctgggccgagcgc
ggcgacccgccggaagaaacgatcatcctctcggtcctcgacggtcccgacatcgtctat
gtcggcgctcggccgggcagccatccgctcggcctcgccttccacgtcggcatgcggctg
ccggcgcacctggcagccaccggcaaggccatgctcgccttccatgaccccgccgaggtg
cgcgcgcgcctgccggcctcgctcgcgccgatggtgcagggccgcggtcccgtgccgatc
gacgagttcctgagcgagatggccgacacgcgtcggcgcggatacagcatcgacgacgag
ggcgtgcgcgaaggcatctactgctacggcgcaccggtgctcgatgcggccgggcaaccg
gtcgccggtgtgggcgtgtgcatccccaagccgctcctgccctccagcggcgagcgcctg
cgcggtgtggtgatccacgtcgccacgcgcctgtccgaacgcatcggcggcccgggcgtg
gctgccgccgccatttccggtccgaagagctga
DBGET
integrated database retrieval system
