Silvanigrella aquatica: AXG55_03260
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Entry
AXG55_03260 CDS
T09772
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
saqi
Silvanigrella aquatica
Pathway
saqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXG55_03260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saqi03019
]
AXG55_03260
03009 Ribosome biogenesis [BR:
saqi03009
]
AXG55_03260
Enzymes [BR:
saqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AXG55_03260
Messenger RNA biogenesis [BR:
saqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXG55_03260
Ribosome biogenesis [BR:
saqi03009
]
Prokaryotic type
rRNA helicases
AXG55_03260
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Helicase_C_2
UvrA_inter
Phage_integrase
Motif
Other DBs
NCBI-ProteinID:
APJ02983
UniProt:
A0A1L4CYE4
LinkDB
All DBs
Position
complement(746780..748420)
Genome browser
AA seq
546 aa
AA seq
DB search
MTNNNTVATEESSIFNLLPETLRTKLIAQGITKPTPIQQASYAPVLAGRDVIAQSRTGSG
KTLAFGLPSFARLEKPQAGKPRILVLTPTRELAQQVADVFEANFKPQGFKILAITGGKSY
RFQTSTLQRGVDAIVATPGRLNDLLEQGAVSLTGVEILVLDEMDEMLDFGFAEDIIKIKS
AIGKKSQTLLFSATFPPKVTNIARQMVSNPFEVKVASTDTSTGQIEHGFIEVKMGRNLDA
LLGLLIYHDPEHAIIFCKTREETRNIHNALLERGFAAGVLNGEMTQNDRSQTMDRFKNRQ
LRILVATDVAARGIDISGLSHVINYTVPTNVETYTHRAGRTGRAGATGKAWTIITHMERR
EFQFVCNKIKINPTRIDLPDAKKIATQFFNNMLFRVNENSVAAQEYINQSVEQIISKLDA
DKLKEVLATLLKSEASRQLGKSLHVEDIAPPYKTEFGMNADTSKFSNGGGHSGDRGGRSR
GGFGRGGDRGGRFGSSGGGRSYSDRGSKFGSSSSNDNKKSGSKGFGGRGTSKKSSESNGK
RNYPIA
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgacaaataacaatactgtcgcaacagaagagtcctctatttttaacttattgcctgaa
acgcttcgtacgaaactaatcgcacaaggtattacaaagccaacacctattcaacaagca
tcatacgctcctgttcttgcaggacgtgacgttattgctcaaagccgaacaggctctggg
aaaactcttgcttttggattgccgtcctttgcacgcttggaaaaaccacaagcaggtaag
cctcgaattcttgtgcttactccgactcgcgaacttgcacaacaagttgctgatgttttt
gaagcaaactttaaacctcaaggcttcaaaattttagctattacaggtggcaaaagctac
cgcttccaaacttcaaccttacaacgtggtgtggatgctatcgtggcaactccaggccgt
ttaaacgaccttttagagcaaggtgccgtcagcttaacgggagtagaaatccttgtctta
gacgaaatggacgaaatgcttgattttggttttgcagaagacattatcaaaattaaaagt
gccattggaaaaaaatcccaaactttattattttcagcaacttttcctccaaaagtaaca
aatattgcacgccaaatggtgtcaaacccttttgaagttaaagtcgcaagtacagataca
agcacaggtcaaattgaacatggctttatcgaagttaaaatgggacgtaatcttgatgcc
ctcttaggcttgttaatttatcatgatccagaacatgctattatattttgtaaaactcgc
gaagaaacacgcaatattcacaatgctctcttagaaagaggttttgctgcaggcgtttta
aatggtgaaatgactcaaaacgaccgtagccaaactatggatcgctttaaaaatcgtcaa
ctccgcatcttagtagcaacagatgttgctgcacgtggtatcgatatttctggtttatcc
catgttatcaactatacagttcctacaaatgtggaaacatacacacaccgtgccggtcgt
acaggccgcgctggggcaactggaaaagcttggacaatcattacgcacatggaacgccgt
gaattccaattcgtttgcaacaaaattaaaatcaatcctacacgcattgatctccctgat
gcaaagaaaattgcgactcaatttttcaataacatgttgttccgcgtaaatgaaaattct
gtggcagcacaagaatatatcaatcaatctgtcgaacaaattatttcaaaacttgatgca
gataagttgaaagaagtgttagcaactcttttaaaatcagaagcatcaagacagcttggt
aagagtcttcatgttgaagacatcgcacctccttataaaacagaatttggcatgaatgcc
gacacttctaagtttagcaatggtggtggacacagcggagatcgcggtgggcgctcccgt
ggtggttttggccgtggaggtgatcgcggcggtcgctttggtagtagcggaggaggtcgt
tcctattctgaccgcggaagtaagtttggaagctcttcttctaacgataataaaaagtca
ggctcaaaaggctttggtggtcgtggaacttccaaaaaatctagtgaaagtaatggcaaa
agaaattaccctattgcctaa
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