Silvanigrella aquatica: AXG55_03370
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Entry
AXG55_03370 CDS
T09772
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
saqi
Silvanigrella aquatica
Pathway
saqi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
saqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AXG55_03370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saqi03400
]
AXG55_03370
Enzymes [BR:
saqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AXG55_03370
DNA repair and recombination proteins [BR:
saqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AXG55_03370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
TRCF
ResIII
Cas3-like_C_2
UB2H
IstB_IS21
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
APJ03004
UniProt:
A0A1L4CYH6
LinkDB
All DBs
Position
complement(771867..775409)
Genome browser
AA seq
1180 aa
AA seq
DB search
MNLFSLEPNLIEVIASLMESKSVTKILIANSESEAQEIEEFIKNISEGFLTTKDILYIPG
FFQAGVFRYESARKIIAKRIESSFLLGTHFPRIIICSIAGFTRNFPSFHWLQKNKYEIKI
GEDLDPDLLMEQLSQLAYLQVQRVEEVGEFSIRGSIIDFWTPGEKHPSRIEIFDDKIDKI
RSFRASDQRSFQTLEQVVMLPSREFIWPYPSQMEAAIEKFNSYILSQHVMGVGRANLLED
LKANVPFAGIDDLFYMFISDSLISFHEFIHEYAQKNNVKISLGYIGSENVYLNAIQEIEK
LYENALISATSKNYPVGKIESVFPNLALAKNYFNVTNCLESRFHIPEKIAQDLKSCEKQK
LSNRITKIQELFVNENPDSQIKNLLILSNSEDSFLEFLGITSKYLNLNYENQTNINKFNL
NDILNSNLINNKIKDQLHFCLLNSKEGFYLPKSKTLAISESWIRGTASAEKFETFQEEEN
PQSSKQNSEAFLSAQYADFVEGDLVVHIQHGIARFRGLMTIKILDITGDFLALEYAGNDK
IYVPVHKLNLIQKYIGSSEGTSLDALKSSTWEKRKAKAKADVEKLAKELMEHQAKRSITP
GHAFAKIDEEYIAFEDAFPFDETPDQQRAIKEIMTDMNKPKAMDRLLCGDVGFGKTEVAM
RAAFRCILDGKQVAWLVPTTVLAHQHYRSLKERFADFAANITILDRSITSTSKVLEKIKK
GEIDILIGTHRILSKDIEFRDLGLLIVDEEQRFGVLQKEKIKSMSYGIDVLTMTATPIPR
TLQMAMVGLRDLSLLTTPPKSRLATKTFVCPFDEESIKESIQFELNRGGQIFYVHNRVEE
LNTVYSYLHNLIPHAKICIGHGKMAQKDLEKTIIDFLDEKYNILLCTTIIESGIDMPNVN
TIIVQNADYFGLAQLYQLRGRVGRRSTRGYAYFLYSQNAKEDQEGMKRLEILKEHQELGS
GFVIASHDMEMRGSGNILGDEQSGKVSDVGLETYLQMLDDAIKTLGGIKLTNITEVEIQI
PLVAQIPENYVQNSKERLRTYRRFFGARQESALQNLITECEDRFGTMPVEVKNLAELARI
RRWLQSLGALSLIVSDDSTEIRLNKGILQPEYQDEASELLIKRILDVCNRKVKGMRITPD
GRLLFALRKKNFIQDKDSTISELKRILSLLAGEAYEDKVT
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttttttctcttgagcccaatctgattgaagtgattgcttctttaatggaatca
aaaagtgtcacgaaaattttaattgcaaatagcgaatcagaagctcaagaaattgaagaa
tttataaaaaatatttcagaaggatttttgactacaaaagatattttatatattcctggt
ttttttcaagcaggagtatttcgttatgaatcggcaagaaagatcattgcgaaacgaata
gaatcctcttttttacttggaactcattttcctcgtattattatttgcagtatagctgga
tttacgagaaattttccctcatttcattggttacaaaaaaacaaatatgaaataaaaatt
ggcgaagatctcgatcccgatttattaatggaacagctatcacaacttgcttatttgcaa
gtccaacgagttgaagaggtaggtgaatttagtattcgaggatctataattgatttttgg
acacctggagaaaagcatccctcacgaattgaaatatttgatgataaaatagataaaatt
cgttcttttagagcatcggatcaaagatcatttcaaactctagaacaagtcgtaatgtta
ccttcccgtgagtttatttggccctaccccagccaaatggaagcggcaattgaaaaattt
aattcttatattttaagtcaacatgtaatgggagtgggcagggcaaatttattagaagat
ttaaaagccaatgttccttttgcaggaattgatgatcttttttatatgtttatatctgat
tccctaatttcttttcacgaatttattcatgaatatgcacaaaaaaacaatgtaaaaatt
tctctaggctatataggatctgaaaatgtttatttaaacgcaattcaagaaattgaaaaa
ctttatgaaaatgctttaatttctgccacatctaaaaactatcccgttggtaaaatagag
tctgtatttcctaatttagctcttgcgaaaaattattttaacgtaacaaattgtctagag
tctcgatttcatattccagaaaaaattgcgcaagatttaaaatcatgcgagaagcaaaaa
ctatcaaatagaattacaaaaattcaagaattatttgtaaatgaaaatcctgattcacaa
attaaaaatcttcttattctgtcaaattcagaagacagctttcttgaatttttaggtatt
acttcgaaatatttaaatttaaattatgaaaatcaaaccaatattaataaattcaattta
aatgatattttaaattcaaatttaataaacaacaaaattaaagatcaattgcatttctgt
ttattaaattctaaagaaggattttatcttcccaaaagtaaaaccttagcaatatcagaa
tcatggattcgtggaaccgcttctgcagaaaaatttgaaactttccaagaagaagaaaat
ccacagagttcaaagcaaaactccgaagcatttttaagtgctcaatacgccgattttgtc
gaaggagatcttgttgtacacattcaacatggtattgcacgttttcgtggattaatgacc
attaaaattcttgacataacgggtgatttcttagctttagaatacgctggaaatgacaaa
atttatgttcccgttcataaactcaatctcatccaaaaatatattggatcatcagaaggc
acctctctagatgctttaaaaagttctacctgggaaaaaagaaaagcaaaagctaaggca
gatgttgaaaaacttgctaaagaattaatggaacatcaagccaaaagatcaatcacacca
gggcatgcattcgctaaaattgatgaagaatatattgcctttgaagatgcctttcctttt
gatgaaacccctgatcaacagcgcgccataaaagaaattatgacagatatgaataaacct
aaagccatggacagactgctttgcggagacgtgggatttggcaaaacagaagttgctatg
cgcgctgctttccgctgtattttagatggaaaacaagtggcctggcttgttccaactaca
gtattagcacatcaacattatcgatctcttaaagaaagatttgccgattttgccgccaat
attacaattttggatcgatctataacatcgacatcaaaagttttagaaaaaattaaaaaa
ggtgaaattgatattttaattggaacacaccgtattttatcaaaagacatagaatttagg
gatttaggacttcttattgtcgatgaagagcaacgcttcggcgtattgcaaaaagaaaaa
atcaaatccatgtcctatggtattgatgtgctcacaatgacggcaacgcccattcctaga
actctgcaaatggctatggtcggcttgagagatttaagtttattaaccacgcctcccaag
tcacgtctcgcaacaaaaacttttgtctgcccttttgatgaagaaagtattaaagaaagc
attcaatttgaattaaatcgtggcggacaaatattttatgttcacaaccgtgtcgaagaa
ttaaatacagtttattcttatctgcataatttaattcctcatgctaaaatatgtattggc
cacggaaaaatggcgcaaaaagatcttgaaaaaacaattatcgattttttagacgaaaaa
tataatattttactatgcacaaccattattgaatcgggaattgatatgcccaatgtcaat
accatcattgttcaaaatgcggattattttgggcttgcacaattgtatcaattgcgcggt
cgcgtaggaagaagatcaacacgtggttacgcttattttctatactcacaaaatgcaaaa
gaagatcaagagggaatgaagcgacttgaaatattaaaggaacatcaagaactcggcagt
ggttttgttattgcaagccatgacatggaaatgcgcggttctggaaatattttgggtgat
gaacaaagcggtaaagtaagtgatgtcggacttgagacttatttacaaatgctagatgat
gcgattaaaacactaggaggaattaaattaacaaatattacggaagttgaaattcaaatt
ccactcgtagcccaaattccagagaattacgtgcaaaattccaaagaacgcttgcgcaca
taccgtcgcttttttggtgctcgccaggagagtgcattgcaaaaccttatcacagaatgc
gaagatcgatttggaacaatgcctgttgaagtaaaaaatctggcagaacttgcgcgtatc
agaagatggctgcaatcacttggagctctttcacttattgtaagtgatgattccacagaa
atccgccttaataaagggattttgcaaccagaatatcaagatgaagcaagcgaattgctt
ataaaacgaattcttgatgtctgcaatcgtaaggttaagggcatgcggattacaccagat
ggaagactgctttttgcacttcgcaaaaagaacttcatacaggataaggactctacaata
tcagagttaaagagaattttaagtctcctggctggggaagcttatgaggataaggttaca
taa
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