Silvanigrella aquatica: AXG55_05105
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Entry
AXG55_05105 CDS
T09772
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
saqi
Silvanigrella aquatica
Pathway
saqi03410
Base excision repair
saqi03430
Mismatch repair
saqi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
saqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AXG55_05105
03430 Mismatch repair
AXG55_05105
03440 Homologous recombination
AXG55_05105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saqi03400
]
AXG55_05105
DNA repair and recombination proteins [BR:
saqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AXG55_05105
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AXG55_05105
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AXG55_05105
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
ThiG
Motif
Other DBs
NCBI-ProteinID:
APJ03313
UniProt:
A0A1L4CZC3
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Position
1203207..1205000
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AA seq
597 aa
AA seq
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METETIFLGKASTNGFTKNENRLCTTDRFVWKLRDIVADNPSQIEEYLTRKKIFLLDNQK
LEENNSLLSLLPEPWLLKDVRKAAERIIQAIRNKEKIVIFGDYDVDGTTSCAMLSQFFNE
INYPVEIYIPDRILEGYGLNVTGLRKLAQNNVKVVVTVDNGISAIDACAEAIQLGMDVII
TDHHDIPPVLPSAFAILNPKQTDCLFPYRMLAGVGVAFYLMVAMRTLLREQGQNCVVNLK
SFLDFVAIGTIADMAPLTGVNHILCKVGLEVLLQNIQQKKRIGLFELLKCAGWKENSKVD
SVDIGFKIGPRLNAAGRLGNALRSVELMCTNDVVLAQEMALHLHQENAERQTLEKAFTQE
AIDQVKQGTELPDALVLHQEDWHPGVVGLVATRVLDKFYRPVLVFGTIDGKLKGSGRSTH
SFNLFAVLNEVRNEFISFGGHYHAVGLTLLPEKLPWLKEYLAQKANELIDSHDKIPPLFI
DGVLPLSHLNISFLKRLEELEPYGIENPRARWFVGPLTVAHVKRMGKDFSHGHAKLLVLE
EGCEFWITAFGLADVFEEFLATGIEVQLVVEAKLSSWNGRLTSDIRVIDYAPVIYTS
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggaaacggaaaccatttttctgggtaaagcgagcacaaatggttttacaaaaaatgaa
aatcgtttgtgcaccaccgatcgttttgtttggaaattaagagatattgttgcagataat
ccttcacaaattgaagaatatttaactcgaaaaaagatttttttattagacaatcaaaaa
cttgaagaaaataattcgttactttctttgttacctgaaccttggctattaaaagatgtg
cgcaaagctgcggaaagaataattcaagctatacgcaataaagaaaaaatagttattttt
ggtgattatgatgttgatggtacaacatcttgtgctatgttatcccagttttttaatgaa
ataaattatcctgtagaaatttatatacccgatcgtattttagaggggtatggtctaaat
gtaacaggacttagaaagttagcacaaaataatgtaaaagtagttgttacagtagataac
ggaatttccgctattgatgcctgtgccgaagcaattcaattgggaatggatgtgattata
acagatcatcatgatattccccctgttcttccaagtgcttttgctattttaaatcccaaa
caaaccgattgcttgtttccttaccgcatgcttgcgggtgtgggcgttgcattttatctt
atggtcgcaatgcgcactcttttgcgtgagcaaggacaaaattgcgttgttaatttaaaa
tcatttctcgattttgtggccattggaaccattgctgatatggcacctttaacaggtgtt
aatcatattctttgtaaagtaggtcttgaagttcttttgcaaaatattcagcaaaaaaaa
cgtattggtctttttgaattattaaaatgcgctgggtggaaagaaaattctaaagtcgat
tctgtggatattggatttaaaataggaccccgtttaaatgctgccggacggttaggaaat
gcgctgcgtagtgtcgaacttatgtgtacaaatgatgttgttttggcacaagaaatggct
ctgcatctgcatcaagaaaatgcggaaaggcagactcttgaaaaagcgtttacccaagaa
gcgatcgatcaagtgaagcaaggtacagagcttcccgatgctcttgtcctccatcaagaa
gattggcaccctggtgtggtaggtcttgtagcaacgcgtgtgctcgacaaattttatagg
cctgttcttgtttttggaaccatagatggaaagttaaagggaagcgggcgttcgacgcat
tcttttaatttatttgctgttttaaatgaagtacgtaatgaatttatttcatttggtggg
cattatcatgctgtgggattaacacttcttcctgaaaaattaccttggttaaaagagtat
ttagcgcaaaaagcaaatgagcttattgattctcacgataaaattccgcccctctttatt
gatggcgttttgccattgagccatttaaatataagttttttgaaacgactagaagagctt
gaaccctatggcattgagaaccctcgtgctcgttggttcgtgggacctcttactgttgcg
catgttaaaagaatgggtaaggatttttcccacggacatgctaagctgttggttctggag
gagggatgcgaattttggatcacagcctttggtcttgccgatgtgtttgaagagtttctg
gcgacagggattgaagtgcaactggtagtcgaagcaaagctaagcagttggaacggacgc
ctcacatctgatattcgtgtgatcgattatgctcccgtcatctatacgagttga
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