Silvanigrella aquatica: AXG55_11465
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Entry
AXG55_11465 CDS
T09772
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
saqi
Silvanigrella aquatica
Pathway
saqi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
saqi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AXG55_11465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saqi03021
]
AXG55_11465
03400 DNA repair and recombination proteins [BR:
saqi03400
]
AXG55_11465
Enzymes [BR:
saqi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AXG55_11465
Transcription machinery [BR:
saqi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AXG55_11465
DNA repair and recombination proteins [BR:
saqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AXG55_11465
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
APJ04494
UniProt:
A0A1L4D2S2
LinkDB
All DBs
Position
2681304..2685476
Genome browser
AA seq
1390 aa
AA seq
DB search
MANLASSFVRHRRSFAKVKPIIGMPNLIDIQKKSYAEFLQGTDSADSRIEAGLQGVFKSV
FPVQDFDATASVEFVSYSLDEPKYTVEECRSKGMTYAAPVKVLIRLIIWDIDHDTGVKSI
RGFKEQEVYFGEIPLMTQNGTFIINGTERVVVSQLHRSPGVFFDHDKGKTLSSGKFLYNA
RVIPYRGSWLDFEFDTKDILYCRIDRRRKMPATVLLKALGYTTEELLGTFYECETVVIRD
GQFFRKVDLDRLRGQRASSDIMDPKNPSNTLVKRNRKISVLHIKQLKAAGVEELHFPQEE
LIGKIIGQDIIDDDTGEVLFPINTEISEKIVDAITQRGISSFQILFIDDLNVDSSFRDTL
MVDKTLNTEEALLEIYRRMRPGDPPTLENASNLFQNLFFEKDRYDLSRVGRLKLNEKLDL
GIDIDYRTLTREDIIGTVKRLLDVRSGKIKVDDIDHLGNRRVRAVGELLENQYRIGLTRI
ERAIKERLQLQDLDSLMPHDLVNAKPVTAVVKEFFGSSQLSQFMDQTNPLAEVYHKRRLS
ALGPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIVSLASFAQVNKYGFIETPY
RTVTDRLPIDEVRYYSSTDEWRDHVIAQARIYPDHENKINANDLLNARSSGETNIYSAEE
VDLMDVATNQAVSVAASLIPFLQNDDAHRALMGANMQRQGLPLLRTKAPLIGTGMERTVA
ADSGVTVVSRRAGTVISVDAERVVIKANEVSSDVTEVASEVDIYTLVKFTRSNVDTCVNQ
KPIVKVGDKVEKGDIIADGFATEMGELALGQNVVVAFLPWNGYNYEDGIVVSERIVREDL
YTSVYIQEFECISRDTKLGKEEITSDIPNVSDESLKDLDDAGVVRIGAEVKPGDILVGKL
TPKAETQLTPEEKLLRAIFGEKAADVRDTSLRVPPGVQGTVIGAKVFSREGAELDSRMIQ
VQEQEIAKLKKDERDRIQIIRKSTVEKLESLLAGESAAVSFETKHESQTHKIASGEKITR
EAFAGMTIEQIKSLEVISSDKSALLAKIKKSMNEKIALVREMTESQIARAKRGDELPPGV
IKMVKVYVAIKRRLQVGDKLAGRHGNKGVISKIVPIEDMPYLENGQPVDIVLSPLGVPSR
MNIGQIMETHFGWAARGIGQKINDMLDKAAPRKELEDYICKVWDDPSVHEFVKSCTNEEL
RQFVRKYKEGVTLSNPVFDGAEEEEIFKYLELADLDRSGQVTLYDGRTGEKFNRQVTVGV
MYVLRLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYTLQE
FLTVKSDDIAGRTKMYEAVVKGENMMLPGLPESFNVLVKEMQSLALDVSLIRDESEISLD
DLQRDVREIQ
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggccaacctggcatctagcttcgtccgtcaccgccgcagttttgctaaagtaaaacca
attattggaatgccaaatctaattgacattcaaaagaagtcgtacgctgaattcttacaa
ggtaccgattccgctgattctcgcattgaagcgggtttacaaggcgttttcaagagtgtt
ttccctgtgcaagattttgatgcaacagcttctgttgaattcgtcagttattcacttgac
gagccaaaatacaccgttgaagagtgccgctccaaaggcatgacttatgctgcccctgta
aaagttcttattcgtctcatcatttgggacattgaccatgacaccggagtcaaatccatt
cgtggtttcaaagaacaagaagtttactttggtgaaatccctctcatgactcaaaacgga
acatttatcataaatggtaccgagcgtgttgtggtttcgcaacttcaccgttcacctggt
gtattttttgaccatgacaaaggcaaaacactgtcctccggtaaattcttgtataacgcc
cgcgttataccttaccgcggttcatggcttgattttgaatttgacacaaaagatattctt
tattgccgaatagatcgtcgcagaaaaatgcctgcaactgttctgttaaaagcacttggt
tataccacagaagaacttttaggaacattctacgaatgcgaaactgttgtcattcgtgat
ggtcagttcttcagaaaagttgacctcgatcgcttacgcggacaacgagcttctagcgat
attatggatcctaaaaatccaagtaacactttggtaaaacgtaaccgtaaaatttcagta
ctgcatattaaacaattaaaagcagcaggcgtagaagaactccatttcccacaagaagaa
cttattggaaaaatcattggtcaagacattattgacgatgacaccggtgaagttttattc
ccaattaataccgaaatttctgaaaaaattgtcgatgccattacgcaaagaggcatttcc
tctttccaaattctctttatcgacgatcttaacgtagattcctctttccgtgacaccctc
atggtagataaaacgttaaatacagaagaagctcttcttgaaatttatcgtagaatgcgt
ccaggggatccaccgacacttgaaaatgcaagtaatcttttccaaaatttattctttgaa
aaagacagatacgacttatcacgtgtaggtcgtttaaaattaaatgaaaaattagacctt
ggtattgacattgattaccgcaccttaactcgcgaagatatcattgggacagtaaaacgt
cttctcgatgtccgcagcggtaaaattaaagtggacgacattgaccaccttggcaaccgt
cgtgtgcgtgccgttggtgagttactcgaaaatcaataccgcattggattaacccgtatt
gaacgcgctattaaagagcgtctgcaattacaagatctcgacagccttatgccgcacgat
ctcgtcaatgcaaaacctgtaactgccgttgtgaaagaattctttggttcttctcagctt
agccagtttatggatcaaacaaacccacttgctgaagtttaccacaaacgccgtttatca
gccctcgggcctggtggtctttcacgtgaaagagccggcttcgaagtgcgtgacgttcac
ccaacgcattacggtcgtatttgtcctattgaaacacccgaaggtccaaacattggtctt
atcgtttctttagcgtcctttgctcaagtaaacaaatatggatttatcgaaacgccatat
cgtactgttaccgatcgtcttcctatagatgaagttcgttactactcgtctacagatgaa
tggcgtgatcacgttattgcgcaagcacgcatttatcctgatcatgaaaataaaattaat
gccaacgatcttcttaacgcacgtagttctggtgaaaccaatatctactctgcagaagaa
gtcgaccttatggatgtggcaacaaaccaagcggtttctgttgcggcatcacttattccg
tttcttcaaaatgacgatgcccaccgtgccctcatgggtgccaacatgcaacgccaaggc
ttgcctttgctacgcacaaaagcaccactcattggtacaggcatggaacgcactgtggcg
gccgactccggcgttacagtggtttcccgtcgtgcaggtactgttatttctgttgatgcg
gaacgcgttgttattaaagcaaacgaagtttcctctgacgtgacagaagtggcatcggaa
gtggacatttacactctcgtgaagtttacacgttccaacgtggacacctgtgtcaaccaa
aaaccaattgttaaagtgggcgataaggttgaaaaaggtgacattattgcggacggtttt
gcaactgaaatgggcgaactcgctcttggccaaaacgtcgtcgtcgcgttccttccttgg
aatggctacaactacgaagatggtattgttgtttctgagcgcattgttcgcgaagatctc
tatacatctgtttatattcaagaatttgaatgtatcagccgtgatacaaaacttggaaaa
gaagaaatcacttcagatattcctaacgtcagcgatgagtctctcaaagacctcgacgac
gccggcgtcgtgcgcattggtgctgaagtaaaaccaggagatattctcgttggtaagctc
actccaaaagcagaaacacaactgacaccggaagaaaaacttctccgtgccatcttcggt
gaaaaagctgcagacgtgcgtgacacctcccttcgtgttccaccgggagtacaaggtact
gttatcggtgcgaaagtattctctcgtgaaggtgcggaactcgatagccgtatgattcaa
gttcaagaacaagaaattgctaaactcaaaaaagatgagcgcgatcgtattcaaattatc
cgcaaatccactgttgagaaattagagtctcttcttgctggtgaatccgctgctgtcagt
tttgaaacaaaacacgaaagccaaacccacaaaattgcttcgggcgaaaaaatcaccaga
gaagcttttgcgggcatgacaattgaacaaattaaatcactcgaagtgatcagctccgac
aagagcgctcttcttgctaaaatcaagaagtccatgaacgaaaaaatagctctcgttcgt
gaaatgacggaatcgcaaattgcacgcgcaaaacgcggtgacgaattgcctccaggcgtt
atcaaaatggttaaagtttatgtggctatcaaacgccgtcttcaagtgggtgataaactc
gcaggtcgtcacggtaacaagggtgttatttctaaaatcgtaccgattgaagacatgcct
taccttgaaaatggccaacctgttgatatcgtgttgagccctcttggggttccttcacgt
atgaacatcggacaaattatggaaacacactttggttgggcagcacgaggcattggtcaa
aaaatcaatgatatgctcgataaagctgcaccacgcaaagaacttgaagactatatctgc
aaggtttgggacgatccttctgttcacgaatttgtaaaatcttgtacaaacgaagaatta
cgccaattcgtacgcaaatataaagaaggcgtcacactttcaaaccctgtgtttgacggt
gccgaagaagaagaaatctttaaatatcttgaacttgccgacctcgatcgctcaggacag
gtcacactgtatgatggtcgtaccggtgaaaaattcaatcgccaggttacagtcggagtc
atgtatgtgcttcgtcttcaccaccttgttgatgagaaaatccacgcgcgctctattggg
ccttacagccttgttacgcaacagcctcttggtggtaaagcccaatttggtggtcagcgt
ctcggggaaatggaagtgtgggcaatggaagcgtatggagctgcttacacactccaagaa
ttcttaaccgtaaaatcagatgacatcgcaggtcgtacaaaaatgtacgaagcagttgta
aaaggcgagaacatgatgctccctggcttgccagagtccttcaacgttcttgtcaaagaa
atgcaatcgcttgctttggatgtcagcctcatacgtgatgaaagtgaaatcagtcttgat
gatcttcaacgcgatgtgcgtgaaatccaataa
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