Silvanigrella aquatica: AXG55_11470
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Entry
AXG55_11470 CDS
T09772
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
saqi
Silvanigrella aquatica
Pathway
saqi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
saqi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AXG55_11470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saqi03021
]
AXG55_11470
03400 DNA repair and recombination proteins [BR:
saqi03400
]
AXG55_11470
Enzymes [BR:
saqi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AXG55_11470
Transcription machinery [BR:
saqi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AXG55_11470
DNA repair and recombination proteins [BR:
saqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AXG55_11470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Rab3-GAP_cat_C
Motif
Other DBs
NCBI-ProteinID:
APJ05168
UniProt:
A0A1L4D4P2
LinkDB
All DBs
Position
2685501..2689688
Genome browser
AA seq
1395 aa
AA seq
DB search
MNEGSKDVYSFFEKPVDPLSFSAVKIGLASPERIRSWSYGEVKKPETINYRTFKPERDGL
FCGKIFGPVRDFECICGKYKRKKHRGTVCEKCGVEVIESKVRRERLGHINLASPVAHIWF
LKSLPSRIGCVVDISLKDLEKVLYCESYIVLDPGTSDLKKHELISEERFAAKVRELGNNA
LRVGIGADALLEMLQSVDVFELSEQLKESLLNTTSDAQSKKLIKRLKVVGAFTMSDNRPE
WMMLSVIPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLLRLIELNAPEIIVRNE
KRMLQEAIDALFDNGRRGKVFTGPNKRPLRSLSDMLKGKSGRFRQNLLGKRVDYSGRSVI
VAGPELRLHQCGLPKLMALEMFKPFLFNKLEERGYVSTIKSAKKMVEKERPEVWDLLEEC
TKEHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCQAFNADFDGDTMCVHVPLSLE
AQIEARVLMMSTNNILSPQHGTPIIEPRKDIVLGLYYLTRENITLRGDSMKFSSLDEVRV
AYDHGFVELHTRIFVRLNPGEKELVQTTVGRCILKEVIPENVPFFKKYNKALDQKALAVL
VNDTYRLCGAKETVLLADALRELGYRYATESGISIAIKDMMIPKEKVKLLEEAYTEVKEV
REQYAEGLITEGERHNKVIDIWSRVQDEITVKMLKQLETQKAVNQKGETVHIQSFNSLYM
MADSGARGSKQQMRQLAGMKGLVAKATGEIIETPVTSNLREGFTILQYFINTHGARKGLA
DTALKTASSGYLTRQLVDVAQDTIISETDCGTLDGVEITSVVEGGEVIQRVGARTLGRTS
LYDIKNRATGEIIVKANEEINEEAVIRMDLAKIDRVYVRSVLTCRTRRGVCAKCYGRDLA
TGNLVNVGEAVGVIAAQSIGEPGTQLTMRTFHSGGTATTQSQASSYEAKVEGTVQLSNVS
LVKGRSDWDTAMGRNGEVIVYDLDGIERDRHSIPYGSKVFVKDGTAVKVGTMLIEWDPHS
VVIVSEVSGKVKFQDLFEGISVEERTDEVTGLTRRVVIENKDTKIKPAIVVTDSSGTAIR
ITETRDARYPLPSGATIMFADNDNVYPGDVLAKIPREQAKTKDITGGLPRVAELFLAQKR
RTFAIISEIDGFVSFGADIKGKRRVVVTPEMGGGDSREYLIPKGRHVVVTEGDFIRAGEP
LVDGPLNPHDILKVLGEKALASYLVSEIQAVYKLQGVNIDDKHIEIIVKQMLRRVRIKDP
GDTEFLPAAQVEKWTFEEQNELAMQRGARPASAEPLLLGIARAASSTESFISAASFQETT
RVLTEAALAGRKDLLRGLKENVIMGRLIPAGTGVNFYNNLEMFVEGQSLDAEAIIEASIP
QVVARLGSGSHHQMR
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaggttccaaagatgtttacagtttcttcgaaaaacctgtagatcctttgagt
tttagtgccgttaaaattggtttagcttctcctgaacgcatcagaagttggtcttatggc
gaagtcaaaaaaccagaaacaatcaactacagaacatttaaacctgaacgtgatggtctt
ttctgcggaaaaatctttggccccgttcgtgacttcgaatgtatctgtggaaaatacaaa
cgcaaaaaacaccgtggaactgtgtgtgaaaaatgcggcgttgaagttattgagagcaaa
gtacgtcgtgaacgtcttggccacattaacttagcaagccctgtggcacacatttggttc
ttaaaaagcttaccatcccgtatcggttgcgttgtagatatctccttgaaagatcttgaa
aaagttctttattgtgagtcctatatcgtcctcgatcccgggacaagcgatcttaaaaag
catgagcttatttcagaagagcgctttgctgccaaagtccgcgaacttggaaacaatgct
ttacgcgtaggcattggtgccgacgccttgcttgaaatgcttcaatctgtcgatgttttt
gaactctctgaacaactcaaagagtctctcttgaacacgacatctgatgcgcaaagtaaa
aaattaatcaaacgcctcaaagtggtgggtgcctttaccatgagcgataaccgtcctgaa
tggatgatgttatccgttattccggtattgcctcccgacctccgtccccttgttcctttg
gacggcggccgctttgcgacgtctgacttaaacgacctctaccgtcgtgtgatcaaccgt
aataaccgtttgttgcgcttgattgagttaaacgcacctgaaatcatcgtgcgtaatgaa
aaacgcatgctccaggaagctatcgatgccttgtttgacaacggtcgtcgtggaaaagta
ttcaccggtccaaacaagcgtcctctgcgctccctctctgacatgctcaaagggaaaagc
ggtcgtttccgtcaaaacttgcttggtaagcgcgtggactattcaggccgttccgttatt
gtggcaggtcctgaactccgcttacaccaatgcggtctgcctaaacttatggctcttgaa
atgttcaagcctttcttattcaacaagcttgaagaaagaggctacgtttcaacaattaaa
agcgctaagaaaatggtggaaaaggaacgtcccgaagtatgggatctccttgaagaatgt
accaaagaacaccctgttttattaaaccgtgcgccaacacttcaccgtttaggtattcaa
gcgttcgaacctgttctcatcgaaggcaaagctattcagcttcaccctttggtatgccag
gcctttaacgcggactttgacggcgataccatgtgcgtccacgttcctttaagcttagaa
gcgcaaattgaagcacgcgtacttatgatgtcgacaaataacattttgtcacctcagcac
gggacgccgattattgagcctcgtaaggacatcgttcttggactctactatttaactcgt
gaaaatattacgcttcgcggcgacagcatgaaattctcaagtcttgatgaagttcgtgtt
gcctacgatcacggttttgttgaactccacacccgtattttcgttcgcttaaatcctggt
gaaaaagagcttgtgcaaacaactgtaggtcgttgtattttgaaagaagtgattcctgag
aacgttcctttcttcaaaaaatacaataaagccctcgatcaaaaagccttggctgtgctt
gtaaacgatacctatcgcctttgtggtgcaaaagagactgttcttttagccgatgccttg
cgtgagcttggttatcgctatgcgacagaatcaggtatttctattgctattaaagacatg
atgattccaaaagaaaaagtaaaacttttggaagaagcttatacagaagtaaaagaagtt
cgtgaacagtatgcggaaggtctcattaccgaaggggaacgtcacaataaggtaattgat
atttggtcccgcgttcaggacgaaattacggtaaaaatgttgaaacaattggaaactcaa
aaagctgtgaaccaaaaaggcgaaacagtgcatatccaatcattcaactctctttacatg
atggctgactctggagcccgtggttctaaacaacagatgcgtcagttagccggtatgaaa
ggtcttgtggcgaaggcaacgggtgaaattattgaaaccccagtgacttctaacttacga
gaaggtttcactatccttcaatactttattaacactcacggtgcgcgtaaaggtttggcc
gatactgctcttaaaacagcctcttctggttaccttacacgtcagcttgtggacgttgcg
caagatacgatcatctccgaaaccgactgcggaactctcgacggcgtagaaatcacatct
gtggtggaaggcggcgaagttatccaacgcgtgggagctcgtacactcggtagaacatct
ctttacgacattaaaaatcgtgctaccggtgaaattattgtgaaggcaaacgaagaaatt
aacgaagaagccgttattcgcatggatcttgcaaagattgaccgcgtttacgtccgctcc
gttttaacgtgccgcacacgccgtggcgtttgtgcaaaatgttatggtcgtgaccttgca
accggtaacttagttaacgtgggtgaagctgtgggcgttattgccgcacaatccattggt
gagcccggtacacagttgacaatgcgtacgttccactccggtggtacggcgacaacgcaa
tcacaagcatcttcctatgaagcaaaagtggaaggtactgttcaactttctaacgtcagc
ttagtgaaaggtcgtagcgactgggatacggcgatgggtagaaacggggaagtgattgta
tatgaccttgacggcattgaacgcgatcgtcactctattccttatggatcaaaagttttt
gtcaaagatggcaccgctgtaaaagtcggtactatgctcatcgaatgggatccccactct
gtggtcatcgtatctgaagtttcaggtaaggttaaattccaagaccttttcgaaggtatc
tctgttgaagaacgtacagatgaggttactggtttaacccgtcgtgttgtgattgaaaac
aaagatacaaaaatcaaacctgctattgttgtcacagattcctctggaacggctatccgc
attacagaaacccgtgatgcccgctacccacttccaagtggtgcgaccatcatgtttgct
gacaacgataacgtgtatccaggtgatgtgcttgcgaaaattccaagagagcaagcaaaa
acaaaggatattacaggtggtttgccgcgcgttgccgagctcttccttgcgcaaaaacgc
agaacttttgccattatttctgaaattgacggatttgtttccttcggtgcagacattaaa
gggaaaagacgcgttgttgtcacacctgaaatgggtggtggggacagccgtgagtatctt
attccaaaaggtcgccacgttgttgtaaccgaaggtgacttcattcgtgccggagaaccg
ttggttgatgggcctttaaacccacatgacatattaaaagttttaggtgaaaaagctctc
gctagttatctcgtttctgaaattcaggcggtttacaaattgcaaggcgtgaatatcgac
gataagcacattgaaattatagtaaaacaaatgcttcgccgtgtaagaattaaagatccc
ggagatactgagtttcttcccgctgctcaggtggaaaaatggacatttgaagagcaaaac
gaacttgctatgcaaagaggagcacgtcctgccagcgcagaacctctcctattaggtatt
gcaagggcggcgtcttcaacagagtcctttatttccgcggcgtctttccaagagacaacg
cgcgttcttacggaagctgcacttgcaggccgtaaagacttgctccgtggtcttaaagaa
aacgttattatgggtcgcttaattcccgcaggtacaggtgtaaacttctataacaactta
gaaatgtttgtagaaggtcagagtcttgatgccgaggctattattgaggcatcaatccca
caggttgttgctcgccttggatcaggttctcatcaccaaatgagataa
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